Anti-Fibrotic Effects Of A Novel Long-Acting Fgf21 Analogue Zalfermin
RNA-seq (gene expression) · mouse · 19 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 19 samples: 19 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267229_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1110280 and SRA study SRP507044. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 19 sample titles: 19 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8262716 18862, Kidney, MASH, Vehicle
- GSM8262717 18863, Kidney, MASH, Vehicle
- GSM8262718 18864, Kidney, MASH, Vehicle
- GSM8262719 18865, Kidney, MASH, Vehicle
- GSM8262720 18866, Kidney, MASH, Vehicle
- GSM8262721 18867, Kidney, MASH, Vehicle
- GSM8262722 18868, Kidney, MASH, Vehicle
- GSM8262723 18870, Kidney, MASH, Treatment 0194-0499
- GSM8262724 18871, Kidney, MASH, Treatment 0194-0499
- GSM8262725 18872, Kidney, MASH, Treatment 0194-0499
- GSM8262726 18873, Kidney, MASH, Treatment 0194-0499
- GSM8262727 18874, Kidney, MASH, Treatment 0194-0499
- GSM8262728 18875, Kidney, MASH, Treatment 0194-0499
- GSM8262729 18876, Kidney, MASH, Treatment 0194-0499
- GSM8262730 18877, Kidney, MASH, Treatment 0194-0499
- GSM8262731 18878, Kidney, Healthy control, untreated
- GSM8262732 18879, Kidney, Healthy control, untreated
- GSM8262733 18880, Kidney, Healthy control, untreated
- GSM8262734 18881, Kidney, Healthy control, untreated
- GSE255321 Therapeutic effects of FGF21 mimetic bFKB1 on MASH and atherosclerosis in Ldlr-/-.Leiden mice 24 samples shares fgf21
- GSE304958 Glycerol-3-phosphate activates ChREBP, FGF21 transcription and lipogenesis in Citrin Deficiency 40 samples shares fgf21
- GSE302336 Liver FGF21 mediates sex-specific adaptation to juvenile protein malnutrition 20 samples shares fgf21
- GSE266368 Role of FGF21 in cardiac hypertrophy 20 samples shares fgf21
- GSE317757 FGF21counteracts metabolic dysfunction in cancer-associated cachexia 19 samples shares fgf21
- GSE267618 Role of FGF21 in cardiac hypertrophyII 14 samples shares fgf21
- GSE295343 FGF21 reverses MASH through coordinated actions on the CNS and liver 12 samples shares fgf21
- GSE238147 BACH1 suppresses cellular senescence, obesity, and short lifespan by ferroptotic FGF21 secretion 12 samples shares fgf21
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.