Retinal ganglion cell-derived semaphorin 6A segregates starburst amacrine cell dendritic scaffolds to organize the mouse inner retina
RNA-seq (gene expression) · mouse · 855 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 855 samples: 855 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Retinal ganglion cell-derived semaphorin 6A segregates starburst amacrine cell dendritic scaffolds to organize the mouse inner retinaDevelopment (Cambridge, England) · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267419_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1111474 and SRA study SRP507583. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from the first 400 of 855 sample titles: 400 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8265760 SAC, P11A7, ON, rep1
- GSM8265761 SAC, P11A8, OFF, rep2
- GSM8265762 SAC, P11B10, ON, rep3
- GSM8265763 SAC, P11B11, ON, rep4
- GSM8265764 SAC, P11B12, ON, rep5
- GSM8265765 unknown, P11B2, filtered out, rep6
- GSM8265766 unknown, P11B5, filtered out, rep7
- GSM8265767 SAC, P11B6, OFF, rep8
- GSM8265768 SAC, P11B7, OFF, rep9
- GSM8265769 SAC, P11B8, OFF, rep10
- GSM8265770 SAC, P11B9, ON, rep11
- GSM8265771 unknown, P11C10, filtered out, rep12
- GSM8265772 SAC, P11C11, OFF, rep13
- GSM8265773 SAC, P11C12, OFF, rep14
- GSM8265774 SAC, P11C1, OFF, rep15
- GSM8265775 SAC, P11C2, ON, rep16
- GSM8265776 SAC, P11C3, ON, rep17
- GSM8265777 SAC, P11C4, OFF, rep18
- GSM8265778 SAC, P11C5, ON, rep19
- GSM8265779 SAC, P11C6, ON, rep20
- GSM8265780 SAC, P11C7, OFF, rep21
- GSM8265781 SAC, P11C8, ON, rep22
- GSM8265782 SAC, P11C9, ON, rep23
- GSM8265783 SAC, P11D10, ON, rep24
- GSM8265784 SAC, P11D11, ON, rep25
- GSM8265785 SAC, P11D12, OFF, rep26
- GSM8265786 SAC, P11D1, OFF, rep27
- GSM8265787 SAC, P11D2, ON, rep28
- GSM8265788 SAC, P11D3, ON, rep29
- GSM8265789 SAC, P11D4, OFF, rep30
- GSM8265790 SAC, P11D5, OFF, rep31
- GSM8265791 SAC, P11D6, OFF, rep32
- GSM8265792 SAC, P11D7, OFF, rep33
- GSM8265793 SAC, P11D8, OFF, rep34
- GSM8265794 SAC, P11D9, OFF, rep35
- GSM8265795 SAC, P11E10, OFF, rep36
- GSM8265796 SAC, P11E11, OFF, rep37
- GSM8265797 unknown, P11E12, filtered out, rep38
- GSM8265798 SAC, P11E1, ON, rep39
- GSM8265799 SAC, P11E2, OFF, rep40
+ 815 more — browse all 855 samples with per-sample file links →
- GSE304931 Alpha retinal ganglion cell-derived SPP1 instructs microglia to limit neurodegeneration 23 samples shares cell-derived, ganglion
- GSE271004 Transcriptional Analyses of Acinar- And Ductal-Cell-Derived Pancreatic Cancer 59 samples shares cell-derived
- GSE291694 Stem cell-derived human glutamatergic neurons with pathogenic KCNQ2 variants display hyperactive bursting phenotypes 42 samples shares cell-derived
- GSE291068 Trophectoderm-like cells from EPS cells enable generating EPS cell-derived post-implantation embryoids that complete gastrulation [bulk RNA-seq] 34 samples shares cell-derived
- GSE279403 Dietary cysteine enhances intestinal stemness via CD8+ T cell-derived IL-22 28 samples shares cell-derived
- GSE293906 Intestinal mast cell-derived leukotrienes mediate the anaphylactic response to ingested antigens 26 samples shares cell-derived
- GSE293472 The foam cell-derived exosomes exacerbate ischemic white matter injury via transmitting metabolic defects to microglia 24 samples shares cell-derived
- GSE195825 An axonal guidance cue Semaphorin 6D orchestrates systemic metabolism and myelopoiesis through tuning sympathetic innervation 24 samples shares semaphorin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.