Blocking Nuclear Receptor Nr4a3 Unlocks the Senescence Barrier to Promote Direct Cardiac Reprogramming
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 20 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Blocking nuclear receptor Nr4a3 unlocks the senescence barrier to promote direct cardiac reprogrammingScience advances · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267472_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1111544 and SRA study SRP507636. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 24 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8267043 neo_CFs_replicate 1
- GSM8267044 neo_CFs_replicate 2
- GSM8267045 3m_CFs_replicate 1
- GSM8267046 3m_CFs_replicate 2
- GSM8267047 12m_CFs_replicate 1
- GSM8267048 12m_CFs_replicate 2
- GSM8267049 24m_CFs_replicate 1
- GSM8267050 24m_CFs_replicate 2
- GSM8267086 LacZ Neo 1 replicate 1, MGT, Day3
- GSM8267087 LacZ Neo 2 replicate 1, MGT, Day3
- GSM8267088 LacZ Adult 1 replicate 1, MGT, Day3
- GSM8267089 LacZ Adult 2 replicate 1, MGT, Day3
- GSM8267090 LacZ Aged 1 replicate 1, MGT, Day3
- GSM8267091 LacZ Aged 2 replicate 1, MGT, Day3
- GSM8267092 MGT Neo 1 replicate 1, MGT, Day3
- GSM8267093 MGT Neo 2 replicate 1, MGT, Day3
- GSM8267094 MGT Adult 1 replicate 1, MGT, Day3
- GSM8267095 MGT Adult 2 replicate 1, MGT, Day3
- GSM8267096 MGT Aged 1 replicate 1, MGT, Day3
- GSM8267097 MGT Aged 2 replicate 1, MGT, Day3
- GSM8267100 Adult CFs, MGT+shNT rep 1, Day7
- GSM8267101 Adult CFs, MGT+shNT rep 2, Day7
- GSM8267102 Adult CFs, MGT+shNr4a3 rep 1, Day7
- GSM8267103 Adult CFs, MGT+shNr4a3 rep 2, Day7
- GSE267452 Loss of Nuclear Receptor Nr4a3 Alleviates Cellular Senescence to Promote Adult Direct Cardiac Reprogramming 54 samples shares nr4a3, reprogramming, senescence, receptor, nuclear
- GSE267447 Loss of Nuclear Receptor Nr4a3 Alleviates Cellular Senescence to Promote Adult Direct Cardiac Reprogramming (ATAC-Seq) 16 samples shares nr4a3, reprogramming, senescence, receptor, nuclear
- GSE296768 Plaque-induced transcriptional reprogramming of microglia towards lymphoid receptor expression protects against Alzheimer's disease [scRNA-seq] 12 samples shares reprogramming, receptor
- GSE254077 Effect of depletion of NR4A3 on vascular calcification [RNA-seq] 12 samples shares nr4a3
- GSE268822 Transcriptional landscapes underlying Notch-induced lineage conversion and reprogramming of mammary cells 840 samples shares reprogramming
- GSE302857 Multi-tier signaling and epigenomic reprogramming drive microglial inflammatory states and functions associated with demyelination [RNA-seq] 81 samples shares reprogramming
- GSE242709 Global transcriptional profiles of primary and secondary cellular senescence in vivo by oncogene-induced senescence (OIS) and stress-induced senescence (SIS) 76 samples shares senescence
- GSE301216 Distinct lung functional, histological and cell senescence signatures in the single vs repetitive bleomycin mouse model of idiopathic pulmonary fibrosis 53 samples shares senescence
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.