Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-dependent Adaptation
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 8 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-Dependent AdaptationInternational journal of molecular sciences · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268171_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1114810 and SRA study SRP509308. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8287163 MOE, WT, 10wks, rep1 MOE, WT, 10wks,
- GSM8287164 MOE, WT, 10wks, rep2 MOE, WT, 10wks,
- GSM8287165 MOE, WT, 10wks, rep3 MOE, WT, 10wks,
- GSM8287166 MOE, iRhom2-/-, 10 wks, rep1 MOE, iRhom2-/-, 10 wks,
- GSM8287167 MOE, iRhom2-/-, 10 wks, rep2 MOE, iRhom2-/-, 10 wks,
- GSM8287168 MOE, iRhom2-/-, 10 wks, rep3 MOE, iRhom2-/-, 10 wks,
- GSM8287169 MOE, WT, 8wks, rep1 MOE, WT, 8wks,
- GSM8287170 MOE, WT, 8wks, rep2 MOE, WT, 8wks,
- GSM8287171 MOE, WT, 8wks, rep3 MOE, WT, 8wks,
- GSM8287172 MOE, iRhom2-/-, 8 wks, rep1 MOE, iRhom2-/-, 8 wks,
- GSM8287173 MOE, iRhom2-/-, 8 wks, rep2 MOE, iRhom2-/-, 8 wks,
- GSM8287174 MOE, iRhom2-/-, 8 wks, rep3 MOE, iRhom2-/-, 8 wks,
- GSM8287175 MOE, WT, 5wks, rep1 MOE, WT, 5wks,
- GSM8287176 MOE, WT, 5wks, rep2 MOE, WT, 5wks,
- GSM8287177 MOE, WT, 5wks, rep3 MOE, WT, 5wks,
- GSM8287178 MOE, WT, 30wks, rep1 MOE, WT, 30wks,
- GSM8287179 MOE, WT, 30wks, rep2 MOE, WT, 30wks,
- GSM8287180 MOE, WT, 30wks, rep3 MOE, WT, 30wks,
- GSM8287181 MOE, iRhom2-/-, 5wks, rep1 MOE, iRhom2-/-, 5wks,
- GSM8287182 MOE, iRhom2-/-, 5wks, rep2 MOE, iRhom2-/-, 5wks,
- GSM8287183 MOE, iRhom2-/-, 5wks, rep3 MOE, iRhom2-/-, 5wks,
- GSM8287184 MOE, iRhom2-/-, 30wks, rep1 MOE, iRhom2-/-, 30wks,
- GSM8287185 MOE, iRhom2-/-, 30wks, rep2 MOE, iRhom2-/-, 30wks,
- GSM8287186 MOE, iRhom2-/-, 30wks, rep3 MOE, iRhom2-/-, 30wks,
- GSE248864 Hepatic Glucocorticoid Receptor (GR) drives the diurnal adaptation to Caloric Restriction 90 samples shares adaptation, receptor
- GSE241770 ACSS2 mediates an epigenetic pathway to regulate maternal Beta-cell adaptation and progression of gestational diabetes (scRNA-Seq) 7899 samples shares adaptation
- GSE241089 First cleavage is a manifestation of the geometry of the unfertilized oocyte: implications for monozygotic twinning in mice. 219 samples shares implications
- GSE215960 Subclonal evolution revealed by single-cell profiles of expressed mutations identifies adaptation mechanisms to immunotherapy in melanoma [scRNA-seq] 192 samples shares adaptation
- GSE218178 Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance 183 samples shares adaptation
- GSE218173 Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance [acid] 150 samples shares adaptation
- GSE305462 Rac1 palmitoylation is required for cardiac stress adaptation and regulation of Protein Kinase A signaling 18 samples shares adaptation
- GSE277054 Regulation of Cortical Neurogenesis by MED13L via Transcriptional Priming and its Implications for MED13L Syndrome 12 samples shares implications
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.