Transcriptome Analysis Reveals Potential Protective Effects and Biomarkers of Pien Tze Huang on CCl4-induced Liver Cancer (circRNA)
Non-coding RNA profiling · mouse · 18 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 × circRNA AC vs 6 × circRNA AT vs 6 × circRNA AXGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268335_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1116235 and SRA study SRP509823. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 3 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8289804 circRNA AC1 circRNA AC
- GSM8289805 circRNA AC5 circRNA AC
- GSM8289806 circRNA AC8 circRNA AC
- GSM8289807 circRNA AT1 circRNA AT
- GSM8289808 circRNA AT2 circRNA AT
- GSM8289809 circRNA AT4 circRNA AT
- GSM8289810 circRNA AT5 circRNA AT
- GSM8289811 circRNA AT7 circRNA AT
- GSM8289812 circRNA AT8 circRNA AT
- GSM8289813 circRNA AX1 circRNA AX
- GSM8289814 circRNA AX2 circRNA AX
- GSM8289815 circRNA AX3 circRNA AX
- GSM8289816 circRNA AX6 circRNA AX
- GSM8289817 circRNA AX7 circRNA AX
- GSM8289818 circRNA AX8 circRNA AX
- GSM8353914 circRNA AC2 circRNA AC
- GSM8353915 circRNA AC3 circRNA AC
- GSM8353916 circRNA AC4 circRNA AC
- GSE268338 Transcriptome Analysis Reveals Potential Protective Effects and Biomarkers of Pien Tze Huang on CCl4-induced Liver Cancer 51 samples shares ccl4-induced, protective, biomarkers, potential, huang, liver, pien
- GSE269013 Transcriptomic analysis reveals the protective biomarkers of Pien Tze Huang in liver cirrhosis mice model [mRNA_lncRNA] 18 samples shares protective, biomarkers, huang, liver, pien
- GSE230302 Protective effect of Pien Tze Huang on colitis-associated colorectal cancer 20 samples shares protective, huang, pien
- GSE272803 Lipid nanoparticles deliver DNA-encoded biologics and induce potent protective immunity 20 samples shares protective, liver
- GSE302945 A Pathogenic CD8⁺ TRM–Chemokine Axis Orchestrates Liver Fibrosis and Provides Circulating Biomarkers during Chronic Clonorchis sinensis Infection 16 samples shares biomarkers, liver
- GSE244910 Potential landscape decomposes the cell identity conversion in liver regeneration and tumorigenesis [RNA-seq] 10 samples shares potential, liver
- GSE315769 Sex and tissue resolved co-expression networks reveal a female placental–brain axis protective against prenatal PCB exposure 192 samples shares protective
- GSE295168 Identification of Pre-Disease State in NC/Nga Mice with Atopic dermatitis-like Symptoms using Dynamical Network Biomarkers 190 samples shares biomarkers
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.