Mechanisms of gene regulation by SRCAP and H2A.Z
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 186 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 186 samples: 57 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Mechanisms of gene regulation by SRCAP and H2A.ZNature communications · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE269310_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1120926 and SRA study SRP558685. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 118 samples.
How we read this: 57 replicated groups read from 186 sample titles; they account for 118 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8312602 SYAT unt ATAC 1 SYAT unt ATAC
- GSM8312603 SYAT IAA2h ATAC 1 SYAT IAA2h ATAC
- GSM8312604 SYAT IAA4h ATAC 1 SYAT IAA4h ATAC
- GSM8312605 SYAT IAA6h ATAC 1 SYAT IAA6h ATAC
- GSM8312606 SYAT IAA8h ATAC 1 SYAT IAA8h ATAC
- GSM8312607 SYAT unt ATAC 2 SYAT unt ATAC
- GSM8312608 SYAT IAA2h ATAC 2 SYAT IAA2h ATAC
- GSM8312609 SYAT IAA4h ATAC 2 SYAT IAA4h ATAC
- GSM8312610 SYAT IAA6h ATAC 2 SYAT IAA6h ATAC
- GSM8312611 SYAT IAA8h ATAC 2 SYAT IAA8h ATAC
- GSM8312612 unt EG1 1 unt EG1
- GSM8312613 IAA EG1 1 IAA EG1
- GSM8312614 unt telo 1 unt telo
- GSM8312615 IAA telo 1 IAA telo
- GSM8312616 unt EG1 2 unt EG1
- GSM8312617 IAA EG1 2 IAA EG1
- GSM8312618 unt telo 2 unt telo
- GSM8312619 IAA telo 2 IAA telo
- GSM8312620 CGR8 NT ATAC 1 CGR8 NT ATAC
- GSM8312621 CGR8 IAA ATAC 1 CGR8 IAA ATAC
- GSM8312622 CGR8 NT ATAC 2 CGR8 NT ATAC
- GSM8312623 CGR8 IAA ATAC 2 CGR8 IAA ATAC
- GSM8312624 SYAT DNMTi NT 1 ATAC
- GSM8312625 SYAT DNMTi IAA 1 ATAC
- GSM8312626 SYAT DNMTi NT 2 ATAC
- GSM8312627 SYAT DNMTi IAA 2 ATAC
- GSM8312628 SRCAPwt NT 1 ATAC
- GSM8312629 SRCAPwt IAA 1 ATAC
- GSM8312630 SRCAPcd NT 1 ATAC
- GSM8312631 SRCAPcd IAA 1 ATAC
- GSM8312632 SRCAPwt NT 2 ATAC
- GSM8312633 SRCAPwt IAA 2 ATAC
- GSM8312634 SRCAPcd NT 2 ATAC
- GSM8312635 SRCAPcd IAA 2 ATAC
- GSM8312655 SYAT unt H2AZ
- GSM8312656 SYAT IAA2 1 H2AZ
- GSM8312657 SYAT IAA2 2 H2AZ
- GSM8312658 SYAT IAA4 1 H2AZ
- GSM8312659 SYAT IAA4 2 H2AZ
- GSM8312660 SYAT IAA6 1 H2AZ
+ 146 more — browse all 186 samples with per-sample file links →
- GSE269304 Mechanistic basis of gene regulation by SRCAP and H2A.Z (ChIP-Seq) 102 samples shares srcap, h2a
- GSE269302 Mechanistic basis of gene regulation by SRCAP and H2A.Z (ATAC-Seq) 34 samples shares srcap, h2a
- GSE269309 Mechanistic basis of gene regulation by SRCAP and H2A.Z (RNA-Seq) 30 samples shares srcap, h2a
- GSE269307 Mechanistic basis of gene regulation by SRCAP and H2A.Z (Mnase-Seq) 12 samples shares srcap, h2a
- GSE287553 Mechanistic basis of gene regulation by SRCAP and H2A.Z (CUT&RUN) 2 samples shares srcap, h2a
- GSE269305 Mechanistic basis of gene regulation by SRCAP and H2A.Z (CUT&Tag) 2 samples shares srcap, h2a
- GSE270196 Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma [CUT&RUN] 8 samples shares h2a
- GSE237806 Competition for H2A.Z Between IAP Elements and Gene Promoters is Governed by ANP32E 53 samples shares h2a
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.