Dynamic expression of Erg controls fetal-to-adult maturation of the hematopoietic system
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 15 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 4 × rnaseq_Tg_BM vs 4 × rnaseq_WT_BM vs 4 × rnaseq_WT_FLGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Dynamic activity of Erg promotes maturation of the hematopoietic systemBlood advances · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE269351_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1121257 and SRA study SRP512055. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 3 replicated groups read from 15 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8307742 rnaseq_Tg_BM1 rnaseq_Tg_BM
- GSM8307743 rnaseq_Tg_BM2 rnaseq_Tg_BM
- GSM8307744 rnaseq_Tg_BM3 rnaseq_Tg_BM
- GSM8307745 rnaseq_Tg_BM4 rnaseq_Tg_BM
- GSM8307746 rnaseq_WT_BM1 rnaseq_WT_BM
- GSM8307747 rnaseq_WT_BM2 rnaseq_WT_BM
- GSM8307748 rnaseq_WT_BM3 rnaseq_WT_BM
- GSM8307749 rnaseq_WT_BM4 rnaseq_WT_BM
- GSM8307750 rnaseq_WT_FL1 rnaseq_WT_FL
- GSM8307751 rnaseq_WT_FL2 rnaseq_WT_FL
- GSM8307752 rnaseq_WT_FL3 rnaseq_WT_FL
- GSM8307753 rnaseq_WT_FL4 rnaseq_WT_FL
- GSM8313572 hichip_bm_tg
- GSM8313573 hichip_fl_wt
- GSM8313574 hichip_bm_wt
- GSE269184 Dynamic expression of Erg controls fetal-to-adult maturation of the hematopoietic system [RNA-seq] 12 samples shares fetal-to-adult, hematopoietic, maturation, controls, dynamic, system
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- GSE205438 RNA splicing controls organ-wide maturation of postnatal heart in mice 88 samples shares maturation, controls
- GSE268623 Dynamic Foxp3-chromatin interaction controls tunable Treg cell function [Cut&Run Foxp3 Batf Ets1] 24 samples shares controls, dynamic
- GSE67857 Host microbiota constantly control maturation and function of microglia in the central nervous system (part 2) 20 samples shares maturation, system
- GSE281969 Dynamic STING repression orchestrates immune cell functionality across development and maturation. 8 samples shares maturation, dynamic
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- GSE233057 A gene regulatory network of the endothelial-to-hematopoietic transition 63 samples shares hematopoietic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.