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Spatial Transcriptome Assays Reveals Gliomas Heterogeneity

GSE270355 Homo sapiens Expression profiling by high throughput sequencing 4 samples Submitted 2024/06/23 Platform GPL24676
Summary
Background: Glioma is a kind of highly heterogeneous central nervous system malignancy and controlled by various molecular processes such as neoplastic transformation, dysregulation of the cell cycle, and angiogenesis. Among these biomolecular events, the existence of inflammation and stress pathways in the development and driving factors of glioma heterogeneity has been reported. However, mechanisms of glioma heterogeneous under stress response remain unclear, especially from a spatial aspect. Methods: This study combined single-cell and spatially resolved transcriptomics and revealed that oxidative stress response genes play a vital role in oligodendrocyte precursor cells from two different types of gliomas: high- and low-grade (HG and LG). Results: In HG, stress triggers metabolic pattern changes from oxidative phosphorylation to glycolysis to avoid apoptosis, along with epithelial-to-mesenchymal transition and increased expression of genes of stress response. Scenic analysis indicated that oxidative stress induced the activation of AP1 in HG, thus enhancing the tumor survival and proliferation process. Conclusion: When all of these factors are considered together, we provide a unique perspective on how oxidative stress response occurs in different grades of gliomas, which would deepen our understanding of evolution and heterogeneity in gliomas.
Published in
Single-cell and spatial transcriptome assays reveal heterogeneity in gliomas through stress responses and pathway alterations
He Z, Liu Z, Wang Q et al. · Frontiers in immunology 2024 · PMID 39257581 · doi:10.3389/fimmu.2024.1452172
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Also filed as BioProject PRJNA1126248 and SRA study SRP515148. Searching any of these in the dataset finder brings you back here.

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