Molecular classification of meningioma predicts the response to surgical resection and adjuvant radiotherapy.
DNA methylation · human · 1378 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 1378 samples: 314 × Tumor methylation I vs 59 × Tumor methylation CW vs 27 × Tumor methylation NWGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE270375_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA1126283. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 400 samples.
How we read this: 3 replicated groups read from the first 400 of 1378 sample titles; they account for 400 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8340382 Tumor methylation I1 Tumor methylation I
- GSM8340383 Tumor methylation I28 Tumor methylation I
- GSM8340384 Tumor methylation I2 Tumor methylation I
- GSM8340385 Tumor methylation I3 Tumor methylation I
- GSM8340386 Tumor methylation I4 Tumor methylation I
- GSM8340387 Tumor methylation I5 Tumor methylation I
- GSM8340388 Tumor methylation I6 Tumor methylation I
- GSM8340389 Tumor methylation I7 Tumor methylation I
- GSM8340390 Tumor methylation I8 Tumor methylation I
- GSM8340391 Tumor methylation I9 Tumor methylation I
- GSM8340392 Tumor methylation I10 Tumor methylation I
- GSM8340393 Tumor methylation I11 Tumor methylation I
- GSM8340394 Tumor methylation I12 Tumor methylation I
- GSM8340395 Tumor methylation I13 Tumor methylation I
- GSM8340396 Tumor methylation I14 Tumor methylation I
- GSM8340397 Tumor methylation I15 Tumor methylation I
- GSM8340398 Tumor methylation I16 Tumor methylation I
- GSM8340399 Tumor methylation I17 Tumor methylation I
- GSM8340400 Tumor methylation I18 Tumor methylation I
- GSM8340401 Tumor methylation I19 Tumor methylation I
- GSM8340402 Tumor methylation I20 Tumor methylation I
- GSM8340403 Tumor methylation I21 Tumor methylation I
- GSM8340404 Tumor methylation I22 Tumor methylation I
- GSM8340405 Tumor methylation I23 Tumor methylation I
- GSM8340406 Tumor methylation I24 Tumor methylation I
- GSM8340407 Tumor methylation I25 Tumor methylation I
- GSM8340408 Tumor methylation I26 Tumor methylation I
- GSM8340409 Tumor methylation I27 Tumor methylation I
- GSM8340410 Tumor methylation I29 Tumor methylation I
- GSM8340411 Tumor methylation I30 Tumor methylation I
- GSM8340412 Tumor methylation I31 Tumor methylation I
- GSM8340413 Tumor methylation I32 Tumor methylation I
- GSM8340414 Tumor methylation I33 Tumor methylation I
- GSM8340415 Tumor methylation I34 Tumor methylation I
- GSM8340416 Tumor methylation I35 Tumor methylation I
- GSM8340417 Tumor methylation I36 Tumor methylation I
- GSM8340418 Tumor methylation I37 Tumor methylation I
- GSM8340419 Tumor methylation I38 Tumor methylation I
- GSM8340420 Tumor methylation I39 Tumor methylation I
- GSM8340421 Tumor methylation I40 Tumor methylation I
+ 1338 more — browse all 1378 samples with per-sample file links →
- GSE310252 Transcriptome-based classification of resected pancreatic ductal adenocarcinoma enhances prognostic modelling accuracy of overall survival following adjuvant treatment 118 samples shares classification, adjuvant
- GSE274709 PIEZO2 mechanoreceptor-expressing fibroblasts in keloids cause short-term recurrence after surgical resection 30 samples shares resection, surgical
- GSE289185 Safety and efficacy of neoadjuvant radiotherapy and immunotherapy in the treatment of esophageal squamous cell carcinoma 29 samples shares radiotherapy, adjuvant
- GSE288070 Radiotherapy plus neoadjuvant and concomitant IL-13Rα2-directed immunotoxin therapy for diffuse intrinsic pontine glioma 19 samples shares radiotherapy, adjuvant
- GSE266334 Fibroblasts expressing PIEZO2 mechanoreceptor in keloids possibly cause alloknesis and short-term recurrence after surgical resection [scRNA-seq] 4 samples shares resection, surgical
- GSE40967 Gene expression Classification of Colon Cancer defines six molecular subtypes with distinct clinical, molecular and survival characteristics 1048 samples shares classification
- GSE39582 Gene expression Classification of Colon Cancer defines six molecular subtypes with distinct clinical, molecular and survival characteristics [Expression] 585 samples shares classification
- GSE65362 Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups. 562 samples shares classification
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.