Effect of Matrigel, Laminin and Poly-L-Ornithine coating substrates on primary enteric glial cells and comparison to in vivo enteric glia
RNA-seq (gene expression) · mouse · 35 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 35 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Extracellular matrix substrates differentially influence enteric glial cell homeostasis and immune reactivityFrontiers in immunology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE271114_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1129996 and SRA study SRP517070. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 35 more — browse all 35 samples with per-sample file links →
- GSE255097 Vascular dysfunction is the primary cause of symptom onset in a mouse model of oxaliplatin-induced peripheral neuropathy: comparison of gene expression in mice injected with Oxaliplatine or control solution [BHN-OXA_A2020] 24 samples shares comparison, primary
- GSE255096 Vascular dysfunction is the primary cause of symptom onset in a mouse model of oxaliplatin-induced peripheral neuropathy: comparison of gene expression in blood vessels from mouse brain and sciatic nerves [BHE-BHN_A2017] 24 samples shares comparison, primary
- GSE310410 Differential 5-FU responses of crypt-derived organoids embedded in collagen versus Matrigel, and their transcriptomic comparison with villus-derived organoids 18 samples shares comparison, matrigel
- GSE228299 Non-canonical RNA substrates of Drosha lack many of the conserved features found in primary microRNA stem-loops 14 samples shares substrates, primary
- GSE11756 Comparison of primary MEF vs HRasV12 + Twist transformed MEF 6 samples shares comparison, primary
- GSE215775 Comparison of mRNA expression between spleen and mesenteric lymph node (mLN) naive CD4+ T (TN) cells 6 samples shares comparison, enteric
- GSE240064 Comparison of unmodified and modified mRNA platforms for Andes virus mRNA vaccine in rodent models 32 samples shares comparison
- GSE240541 Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression 1564 samples shares comparison
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.