Inflammation Impacts Androgen Receptor Signaling in Basal Prostate Stem Cells Through Interleukin 1 Receptor Antagonist
RNA-seq (gene expression) · mouse · 282 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 282 samples: 282 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Inflammation impacts androgen receptor signaling in basal prostate stem cells through interleukin 1 receptor antagonistCommunications biology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE271146_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1130057 and SRA study SRP517124. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 282 sample titles: 282 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8370493 A10S104naive3
- GSM8370494 A10S183inflamed2
- GSM8370495 A10S39naive2
- GSM8370496 A10S79inflamed3
- GSM8370497 A11S190inflamed2
- GSM8370498 A11S44naive2
- GSM8370499 A11S82inflamed3
- GSM8370500 A12S7inflamed2
- GSM8370501 A12S87inflamed3
- GSM8370502 A1S120inflamed2
- GSM8370503 A1S14inflamed3
- GSM8370504 A1S56naive3
- GSM8370505 A2S127inflamed2
- GSM8370506 A2S19inflamed3
- GSM8370507 A2S60naive3
- GSM8370508 A3S11naive2
- GSM8370509 A3S133inflamed2
- GSM8370510 A3S27inflamed3
- GSM8370511 A3S65naive3
- GSM8370512 A4S141inflamed2
- GSM8370513 A4S35inflamed3
- GSM8370514 A4S72naive3
- GSM8370515 A5S149inflamed2
- GSM8370516 A5S40inflamed3
- GSM8370517 A5S78naive3
- GSM8370518 A6S157inflamed2
- GSM8370519 A6S83naive3
- GSM8370520 A7S165inflamed2
- GSM8370521 A7S54inflamed3
- GSM8370522 A7S88naive3
- GSM8370523 A8S171inflamed2
- GSM8370524 A8S31naive2
- GSM8370525 A8S62inflamed3
- GSM8370526 A9S177inflamed2
- GSM8370527 A9S35naive2
- GSM8370528 A9S69inflamed3
- GSM8370529 B10S105naive3
- GSM8370530 B10S184inflamed2
- GSM8370531 B10S76inflamed3
- GSM8370532 B11S191inflamed2
+ 242 more — browse all 282 samples with per-sample file links →
- GSE285574 Foxa1 mutations co-opt nascent transcription factor networks in partnership with androgen receptor to enhance prostate tumorigenicity 38 samples shares androgen, receptor, prostate
- GSE307122 Urinary Clusterin as a Biomarker of Human Kidney Disease Progression and Response to the Endothelin Receptor Antagonist Atrasentan: An Exploratory Analysis from the SONAR Trail 17 samples shares antagonist, receptor
- GSE308698 Impaired IL-10 Receptor Signaling Leads to Inflammation Induced Exhaustion in Hematopoietic Stem Cells 17 samples shares receptor, stem
- GSE267270 Synthetic trimeric Interleukin-6 receptor complexes with a STAT3 phosphorylation dominated activation profile 16 samples shares interleukin, receptor
- GSE263872 Sleep Loss Amplifies the Neuron-Specific Interleukin-1 Receptor Accessory Protein Oncogenic Roles 16 samples shares interleukin, receptor
- GSE263602 The p75 neurotrophin receptor regulates the skeletal stem cell niche through sensory innervation 14 samples shares receptor, stem
- GSE273440 A tumor-associated photoreceptor signature unifies distinct central nervous system malignancies [scRNA-seq] 13 samples shares receptor, stem
- GSE236551 Non-canonical hepatic androgen receptor mediates glucagon sensitivity in female mice through the PGC1α/ERRα/mitochondria axis 12 samples shares androgen, receptor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.