← BioTransfer GEO Dataset Finder
GEO series

IFN-ɣ derived from activated human CD4+ T cells inhibits the replication of SARS-CoV-2 depending on cell-type and viral strains.

GSE271988 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2024/10/10 Platform GPL24676
Summary
Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) infection and vaccination induces T cell immunity as well as B cell responses in immunocompetent individuals. The mechanisms of anti-viral effect by CD4+ T cells as a part of T cell immunity are not fully understood. Here we used and analyzed the culture supernatant (SN) prepared from polyclonally stimulated human CD4+ T cells as a model of soluble mediator(s) from SARS-CoV-2-stimulated CD4+ T cells. Interestingly, this SN inhibited SARS-CoV-2 propagation in a viral strain- and host cell type-dependent manner. The most susceptible strain was original wild-type, and the insusceptible Delta strain in the case of human monocyte cell line. Antibody-dependent enhancement (ADE) of infection with original strain was also abolished in the presence of this SN. The following study revealed that the inhibitory effect against viral expansion by the SN was ascribed to interferon-ɣ (IFN-ɣ) included in SN, not to IFN-α, -β and -λ. These results highlight the important potential of IFN-ɣ as anti-SARS-CoV-2 mediator derived from CD4+ T cells and suggest that we need to understand the SARS-CoV-2 strain-dependent sensitivity against IFN-ɣ in controlling clinical manifestations. In addition, characterization of new SARS-CoV-2 variants in terms of IFN-ɣ-sensitivity will have important implications in selecting therapeutic strategy.
Published in
IFN-γ derived from activated human CD4(+) T cells inhibits the replication of SARS-CoV-2 depending on cell-type and viral strain
Shimizu J, Sasaki T, Ong GH et al. · Scientific reports 2024 · PMID 39496837 · doi:10.1038/s41598-024-77969-4
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE271988_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1134246 and SRA study SRP519201. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 6 more — browse all 6 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.