Comparative Transcriptomics of Broad-Spectrum and Synthetic Cannabidiol Treated Skeletal Myotubes
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 × C2C12 cells, Control vs 6 × C2C12 cells, CBD vs 6 × C2C12 cells, sCBDGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Comparative transcriptomics of broad-spectrum and synthetic cannabidiol treated C2C12 skeletal myotubesPhysiological reports · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE272113_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1135135 and SRA study SRP519558. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 3 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8393407 C2C12 cells, Control 1 C2C12 cells, Control
- GSM8393408 C2C12 cells, Control 2 C2C12 cells, Control
- GSM8393409 C2C12 cells, Control 3 C2C12 cells, Control
- GSM8393410 C2C12 cells, Control 4 C2C12 cells, Control
- GSM8393411 C2C12 cells, Control 5 C2C12 cells, Control
- GSM8393412 C2C12 cells, Control 6 C2C12 cells, Control
- GSM8393413 C2C12 cells, CBD 1 C2C12 cells, CBD
- GSM8393414 C2C12 cells, CBD 2 C2C12 cells, CBD
- GSM8393415 C2C12 cells, CBD 3 C2C12 cells, CBD
- GSM8393416 C2C12 cells, CBD 4 C2C12 cells, CBD
- GSM8393417 C2C12 cells, CBD 5 C2C12 cells, CBD
- GSM8393418 C2C12 cells, CBD 6 C2C12 cells, CBD
- GSM8393419 C2C12 cells, sCBD 1 C2C12 cells, sCBD
- GSM8393420 C2C12 cells, sCBD 2 C2C12 cells, sCBD
- GSM8393421 C2C12 cells, sCBD 3 C2C12 cells, sCBD
- GSM8393422 C2C12 cells, sCBD 4 C2C12 cells, sCBD
- GSM8393423 C2C12 cells, sCBD 5 C2C12 cells, sCBD
- GSM8393424 C2C12 cells, sCBD 6 C2C12 cells, sCBD
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.