Cene expression profile at single cell level of skin cells from Pdgfra lineage cells tracing mice
Single-cell RNA-seq · mouse · 15 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 5 × Head_Epidermis_PdgfraLin+ vs 5 × Head_Epidermis_PdgfraLin vs 5 × Head_DermisGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE273179_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1140553 and SRA study SRP522409. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 3 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8423544 Head_Epidermis_PdgfraLin+_01 Head_Epidermis_PdgfraLi…
- GSM8423545 Head_Epidermis_PdgfraLin+_02 Head_Epidermis_PdgfraLi…
- GSM8423546 Head_Epidermis_PdgfraLin+_03 Head_Epidermis_PdgfraLi…
- GSM8423547 Head_Epidermis_PdgfraLin+_04 Head_Epidermis_PdgfraLi…
- GSM8423548 Head_Epidermis_PdgfraLin+_05 Head_Epidermis_PdgfraLi…
- GSM8423549 Head_Epidermis_PdgfraLin-_01 Head_Epidermis_PdgfraLin
- GSM8423550 Head_Epidermis_PdgfraLin-_02 Head_Epidermis_PdgfraLin
- GSM8423551 Head_Epidermis_PdgfraLin-_03 Head_Epidermis_PdgfraLin
- GSM8423552 Head_Epidermis_PdgfraLin-_04 Head_Epidermis_PdgfraLin
- GSM8423553 Head_Epidermis_PdgfraLin-_05 Head_Epidermis_PdgfraLin
- GSM8423554 Head_Dermis_01 Head_Dermis
- GSM8423555 Head_Dermis_02 Head_Dermis
- GSM8423556 Head_Dermis_03 Head_Dermis
- GSM8423557 Head_Dermis_04 Head_Dermis
- GSM8423558 Head_Dermis_05 Head_Dermis
- GSE273333 Cene expression profile at single cell level of skin cells from Pdgfra lineage cells tracing mice 42 samples shares lineage, tracing, pdgfra, level, cene, skin
- GSE241627 Single-cell lineage tracing uncovers unique skin adipose hierarchy and Sox9-mediated differentiation of adipocyte precursors 12 samples shares lineage, tracing, skin
- GSE213104 Gene expression profile at single cell level of Merkel cells from embryonic, neonatal and postnatal mouse skin 1057 samples shares level, skin
- GSE277789 Spatiotemporal and genetic cell lineage tracing of endodermal organogenesis at single-cell resolution [Smart-seq3-RNA-seq-add] 830 samples shares lineage, tracing
- GSE266496 Spatiotemporal and genetic cell lineage tracing of endodermal organogenesis at single-cell resolution [Smart-seq3-RNA-seq] 140 samples shares lineage, tracing
- GSE276119 Hyperinnervation inhibits organ-level regeneration in mammalian skin 16 samples shares level, skin
- GSE266497 Spatiotemporal and genetic cell lineage tracing of endodermal organogenesis at single-cell resolution [10x-v3-RNA-seq] 13 samples shares lineage, tracing
- GSE327939 High-Resolution Lineage Tracing in Native Tissue Contexts 79 samples shares lineage, tracing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.