Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [in vitro_SVF]
RNA-seq (gene expression) · mouse · 29 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 29 samples: 26 distinct titles, 3 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblastsNature communications · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE273416_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1141573 and SRA study SRP522954. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 29 sample titles: 26 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8428025 invitro_iwat_svf_male_A7
- GSM8428026 invitro_pgwat_svf_female_A10
- GSM8428027 invitro_iwat_svf_male_B7
- GSM8428028 invitro_pgwat_svf_male_B8
- GSM8428029 invitro_iwat_svf_male_B9
- GSM8428030 invitro_pgwat_svf_female_B10
- GSM8428031 invitro_iwat_svf_male_C7
- GSM8428032 invitro_pgwat_svf_male_C9
- GSM8428033 invitro_iwat_svf_male_D7
- GSM8428034 invitro_iwat_svf_female_E7
- GSM8428035 invitro_iwat_svf_female_F7
- GSM8428036 invitro_iwat_svf_female_F10
- GSM8428037 invitro_iwat_svf_female_G7
- GSM8428038 invitro_iwat_svf_male_G9
- GSM8428039 invitro_pgwat_svf_female_G10
- GSM8428040 invitro_iwat_svf_female_H7
- GSM8428041 invitro_iwat_svf_female_H8
- GSM8428042 invitro_iwat_svf_male_H9
- GSM8428043 invitro_pgwat_svf_male_I7
- GSM8428044 invitro_iwat_svf_female_I8
- GSM8428045 invitro_iwat_svf_female_J8
- GSM8428046 invitro_pgwat_svf_male_J9
- GSM8428047 invitro_pgwat_svf_female_K8
- GSM8428048 invitro_pgwat_svf_female_L8
- GSM8428049 invitro_iwat_svf_male_N7
- GSM8428050 invitro_iwat_svf_male_O7
- GSM8428051 invitro_pgwat_svf_female_O8
- GSM8428052 invitro_iwat_svf_male_P7
- GSM8428053 invitro_iwat_svf_female_P9
- GSE273413 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_pgWAT_iWAT_ASC] 143 samples shares preadipocytes, fibroblasts, dimorphic, sexually, resident, adipose
- GSE272408 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [bulk_adipocytes] 62 samples shares preadipocytes, fibroblasts, dimorphic, sexually, resident, adipose
- GSE273407 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_castovary_ASC] 58 samples shares preadipocytes, fibroblasts, dimorphic, sexually, resident, adipose
- GSE273393 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [scRNA-seq] 11 samples shares preadipocytes, fibroblasts, dimorphic, sexually, resident, adipose
- GSE293584 RNA-sequencing of SVF-derived preadipocytes and adipocytes from inguinal white adipose tissue of male mice treated with vehicle, CGRPa, NPY, NE, or SP 21 samples shares svf, preadipocytes, adipose
- GSE283700 RNA-sequencing of SVF-derived preadipocytes from inguinal adipose tissue of male mice differentiating under control conditions or treated with CGRP 15 samples shares svf, preadipocytes, adipose
- GSE262523 Diet-Induced Obesity Disrupts Sexually Dimorphic Gene Expression in Liver and Adipose Tissue in Mice 48 samples shares dimorphic, sexually, adipose
- GSE306420 Mechanisms of sexually dimorphic adipose tissue remodelling upon prolonged breastfeeding 24 samples shares dimorphic, sexually, adipose
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.