RNA-sequencing of SVF-derived preadipocytes and adipocytes from inguinal white adipose tissue of male mice treated with vehicle, CGRPa, NPY, NE, or SP
RNA-seq (gene expression) · mouse · 21 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 21 samples: 7 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Sensory-neuron-derived CGRPα controls white adipocyte differentiation and tissue plasticityCell reports · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE293584_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1245297 and SRA study SRP575982. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 7 replicated groups read from 21 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8885865 adipocyte, control, rep1 adipocyte, control,
- GSM8885866 adipocyte, control, rep2 adipocyte, control,
- GSM8885867 adipocyte, control, rep3 adipocyte, control,
- GSM8885868 adipocyte, cgrp, rep1 adipocyte, cgrp,
- GSM8885869 adipocyte, cgrp, rep2 adipocyte, cgrp,
- GSM8885870 adipocyte, cgrp rep3
- GSM8885871 adipocyte, sp, rep1 adipocyte, sp,
- GSM8885872 adipocyte, sp, rep2 adipocyte, sp,
- GSM8885873 adipocyte, sp rep3
- GSM8885874 adipocyte, npy, rep1 adipocyte, npy,
- GSM8885875 adipocyte, npy, rep2 adipocyte, npy,
- GSM8885876 adipocyte, npy, rep3 adipocyte, npy,
- GSM8885877 adipocyte, ne, rep1 adipocyte, ne,
- GSM8885878 adipocyte, ne, rep2 adipocyte, ne,
- GSM8885879 adipocyte, ne rep3
- GSM8885880 preadipocyte, control, rep1 preadipocyte, control,
- GSM8885881 preadipocyte, control, rep2 preadipocyte, control,
- GSM8885882 preadipocyte, control, rep3 preadipocyte, control,
- GSM8885883 preadipocyte, cgrp, rep1 preadipocyte, cgrp,
- GSM8885884 preadipocyte, cgrp, rep2 preadipocyte, cgrp,
- GSM8885885 preadipocyte, cgrp, rep3 preadipocyte, cgrp,
- GSE283700 RNA-sequencing of SVF-derived preadipocytes from inguinal adipose tissue of male mice differentiating under control conditions or treated with CGRP 15 samples shares rna-sequencing, preadipocytes, svf-derived, adipocytes, inguinal, adipose, treated
- GSE273413 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_pgWAT_iWAT_ASC] 143 samples shares preadipocytes, adipocytes, adipose
- GSE272408 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [bulk_adipocytes] 62 samples shares preadipocytes, adipocytes, adipose
- GSE273407 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_castovary_ASC] 58 samples shares preadipocytes, adipocytes, adipose
- GSE273416 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [in vitro_SVF] 29 samples shares preadipocytes, adipocytes, adipose
- GSE277692 RNA-sequencing of inguinal white adipose tissue (iWAT) from kynurenine 3-monooxygenase (Kmo) knockout mice and wild-type littermates on chow and high-fat diets. 16 samples shares rna-sequencing, inguinal, adipose
- GSE273393 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [scRNA-seq] 11 samples shares preadipocytes, adipocytes, adipose
- GSE254121 Time-Course Analysis of Hepatic Single-Nuclei RNA-Sequencing in Mice Treated with 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) 42 samples shares rna-sequencing, treated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.