A novel noninvasive murine model of neonatal hypoxic ischemic encephalopathy demonstrates developmental delay and motor deficits with activation of inflammatory pathways in monocytes [bulkRNA-seq]
Single-cell RNA-seq · mouse · 22 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 22 samples: 20 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A Novel Non-Invasive Murine Model of Neonatal Hypoxic-Ischemic Encephalopathy Demonstrates Developmental Delay and Motor Deficits with Activation of Inflammatory Pathways in MonocytesCells · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE275712_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1152603 and SRA study SRP528734. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 22 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8483233 P4H1-1M_RNA3
- GSM8483234 P4H1-6F_RNA3
- GSM8483235 P4H1-6F_RNA4
- GSM8483236 P4H4-8M_RNA2
- GSM8483237 P6H7-16M_RNA2
- GSM8483238 P6H8-8F_RNA3
- GSM8483239 P4H4-7F_RNA2
- GSM8483240 P6H9-14M_RNA2
- GSM8483241 P6H9-15F_RNA2
- GSM8483242 P6H12-14F_RNA2
- GSM8483243 P6H7-8F_RNA2
- GSM8483244 P6H12-11M_RNA3
- GSM8483245 P6H12-11M_RNA4
- GSM8483246 P6H8-7M_RNA1
- GSM8483247 N5-3_RNA1
- GSM8483248 N5-4_RNA1
- GSM8483249 N8-3_RNA1
- GSM8483250 N8-4_RNA1
- GSM8483251 P6H63-7_RNA1
- GSM8483252 P6H63-8_RNA1
- GSM8483253 P6H55-7_RNA1
- GSM8483254 P6H55-12_RNA2
- GSE275713 A novel noninvasive murine model of neonatal hypoxic ischemic encephalopathy demonstrates developmental delay and motor deficits with activation of inflammatory pathways in monocytes 46 samples shares encephalopathy, demonstrates, noninvasive, activation, monocytes, neonatal, ischemic
- GSE274183 A novel noninvasive murine model of neonatal hypoxic ischemic encephalopathy demonstrates developmental delay and motor deficits with activation of inflammatory pathways in monocytes [scRNA-seq] 24 samples shares encephalopathy, demonstrates, noninvasive, activation, monocytes, neonatal, ischemic
- GSE287862 Secreted neurofilament light chain (NfL) after neuronal damage induces myeloid cell activation and neuroinflammation [bulkRNA-Seq] 12 samples shares bulkrna-seq, activation
- GSE284245 High resolution transcriptome analysis on a mouse model of hypoxic ischemic encephalopathy using single-nucleus RNA-seq 8 samples shares encephalopathy, ischemic
- GSE283805 Effect of PP2A deficiency on gene expression in CD8+ T cells activation [bulkRNA-Seq] 6 samples shares bulkrna-seq, activation
- GSE292962 Integrated transcriptomic and epigenomic analysis demonstrates apple mango leaf extract induced maturation and functional activation of BMDCs 10 samples shares demonstrates, activation
- GSE289335 TRIM37 interacts with TRIM28 to maintain primordial germ cell identity during migration [bulkRNA-seq, scRNA-seq] 127 samples shares bulkrna-seq
- GSE266047 Therapeutic radiation drives leptomeningeal dissemination of medulloblastoma [bulkRNA-seq] 54 samples shares bulkrna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.