RBBP5 is an epigenetic regulator of mammalian hepatic 12h oscillator [RNA-seq]
RNA-seq (gene expression) · mouse · 96 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 96 samples: 96 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The SET1/COMPASS subunit RBBP5 orchestrates epigenetic control of global proteostasis and the 12h oscillator to safeguard metabolic and cellular homeostasisbioRxiv : the preprint server for biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276155_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1155191 and SRA study SRP529927. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 96 sample titles: 96 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8492078 RBBP5 LKO CT0A
- GSM8492079 RBBP5 LKO CT0B
- GSM8492080 RBBP5 LKO CT2A
- GSM8492081 RBBP5 LKO CT2B
- GSM8492082 RBBP5 LKO CT4A
- GSM8492083 RBBP5 LKO CT4B
- GSM8492084 RBBP5 LKO CT6A
- GSM8492085 RBBP5 LKO CT6B
- GSM8492086 RBBP5 LKO CT8A
- GSM8492087 RBBP5 LKO CT8B
- GSM8492088 RBBP5 LKO CT10A
- GSM8492089 RBBP5 LKO CT10B
- GSM8492090 RBBP5 LKO CT12A
- GSM8492091 RBBP5 LKO CT12B
- GSM8492092 RBBP5 LKO CT14A
- GSM8492093 RBBP5 LKO CT14B
- GSM8492094 RBBP5 LKO CT16A
- GSM8492095 RBBP5 LKO CT16B
- GSM8492096 RBBP5 LKO CT18A
- GSM8492097 RBBP5 LKO CT18B
- GSM8492098 RBBP5 LKO CT20A
- GSM8492099 RBBP5 LKO CT20B
- GSM8492100 RBBP5 LKO CT22A
- GSM8492101 RBBP5 LKO CT22B
- GSM8492102 RBBP5 LKO CT24A
- GSM8492103 RBBP5 LKO CT24B
- GSM8492104 RBBP5 LKO CT26A
- GSM8492105 RBBP5 LKO CT26B
- GSM8492106 RBBP5 LKO CT28A
- GSM8492107 RBBP5 LKO CT28B
- GSM8492108 RBBP5 LKO CT30A
- GSM8492109 RBBP5 LKO CT30B
- GSM8492110 RBBP5 LKO CT32A
- GSM8492111 RBBP5 LKO CT32B
- GSM8492112 RBBP5 LKO CT34A
- GSM8492113 RBBP5 LKO CT34B
- GSM8492114 RBBP5 LKO CT36A
- GSM8492115 RBBP5 LKO CT36B
- GSM8492116 RBBP5 LKO CT38A
- GSM8492117 RBBP5 LKO CT38B
+ 56 more — browse all 96 samples with per-sample file links →
- GSE243942 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [RNA-seq] 125 samples shares epigenetic, rna-seq
- GSE268774 Lymph node macrophages drive immune tolerance and resistance to cancer therapy by expression of the immune-regulatory cytokine IL-33 [RNA-seq] 48 samples shares regulator, rna-seq
- GSE267967 Foxp3 and BATF cooperatively direct cis-regulatory programs and gene expression for functional differentiation of Treg cells [RNA-seq] 26 samples shares regulator, rna-seq
- GSE300014 The CARM1 Epigenetic Enzyme Inhibits Cross-presenting Dendritic Cell Function in Cancer Immunity [RNA-seq] 26 samples shares epigenetic, rna-seq
- GSE246799 Epigenetic recording of stimulation history reveals BLIMP1-BACH2 balance in determining memory B cell fate upon recall challenge (RNA-Seq) 24 samples shares epigenetic, rna-seq
- GSE227108 Integrated single-cell analysis defines the epigenetic basis of castration-resistant prostate luminal cells (scRNA-seq) 18 samples shares epigenetic, rna-seq
- GSE288348 Disease-associated astrocyte epigenetic memory promotes CNS pathology [sgEp300, sgACLY astrocytes bulk RNA-Seq dataset] 18 samples shares epigenetic, rna-seq
- GSE269808 The antiviral nuclear body protein SP140 represses Ifnb1 transcript stabilization by the novel regulator RESIST [WT and SP140 KO RNA-seq] 12 samples shares regulator, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.