Selective interactions at pre-replication complexes categorize baseline and dormant origins
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 211 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 211 samples: 96 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Selective interactions at pre-replication complexes categorize baseline and dormant originsNature communications · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276856_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1159299 and SRA study SRP531943. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 192 samples.
How we read this: 96 replicated groups read from 211 sample titles; they account for 192 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8507010 AS, MTBP, replicate 1 AS, MTBP,
- GSM8507011 AS, MTBP, replicate 2 AS, MTBP,
- GSM8507012 AS, pMCM2, replicate 1 AS, pMCM2,
- GSM8507013 AS, pMCM2, replicate 2 AS, pMCM2,
- GSM8507014 AS, pRQ4, replicate 1 AS, pRQ4,
- GSM8507015 AS, pRQ4, replicate 2 AS, pRQ4,
- GSM8507016 DTB, 0hr, MTBP, replicate 1 DTB, 0hr, MTBP,
- GSM8507017 DTB, 0hr, MTBP, replicate 2 DTB, 0hr, MTBP,
- GSM8507018 DTB, 0hr, pMCM2, replicate 1 DTB, 0hr, pMCM2,
- GSM8507019 DTB, 0hr, pMCM2, replicate 2 DTB, 0hr, pMCM2,
- GSM8507020 DTB, 0hr, pRQ4, replicate 1 DTB, 0hr, pRQ4,
- GSM8507021 DTB, 0hr, pRQ4, replicate 2 DTB, 0hr, pRQ4,
- GSM8507022 DTB, 1hr, MTBP, replicate 1 DTB, 1hr, MTBP,
- GSM8507023 DTB, 1hr, MTBP, replicate 2 DTB, 1hr, MTBP,
- GSM8507024 DTB, 1hr, pMCM2, replicate 1 DTB, 1hr, pMCM2,
- GSM8507025 DTB, 1hr, pMCM2, replicate 2 DTB, 1hr, pMCM2,
- GSM8507026 DTB, 1hr, pRQ4, replicate 1 DTB, 1hr, pRQ4,
- GSM8507027 DTB, 1hr, pRQ4, replicate 2 DTB, 1hr, pRQ4,
- GSM8507028 DTB, 4hr, MTBP, replicate 1 DTB, 4hr, MTBP,
- GSM8507029 DTB, 4hr, MTBP, replicate 2 DTB, 4hr, MTBP,
- GSM8507030 DTB, 4hr, pMCM2, replicate 1 DTB, 4hr, pMCM2,
- GSM8507031 DTB, 4hr, pMCM2, replicate 2 DTB, 4hr, pMCM2,
- GSM8507032 DTB, 4hr, pRQ4, replicate 1 DTB, 4hr, pRQ4,
- GSM8507033 DTB, 4hr, pRQ4, replicate 2 DTB, 4hr, pRQ4,
- GSM8507034 DTB, 8hr, MTBP, replicate 1 DTB, 8hr, MTBP,
- GSM8507035 DTB, 8hr, MTBP, replicate 2 DTB, 8hr, MTBP,
- GSM8507036 DTB, 8hr, pMCM2, replicate 1 DTB, 8hr, pMCM2,
- GSM8507037 DTB, 8hr, pMCM2, replicate 2 DTB, 8hr, pMCM2,
- GSM8507038 DTB, 8hr, pRQ4, replicate 1 DTB, 8hr, pRQ4,
- GSM8507039 DTB, 8hr, pRQ4, replicate 2 DTB, 8hr, pRQ4,
- GSM8507040 DTB, Input, 1hr, R1, 001
- GSM8507041 DTB, Input, 4hr, R1, 001
- GSM8507042 DTB, Input, 8hr, R1, 001
- GSM8507043 H3Y, MTBP, replicate 1 H3Y, MTBP,
- GSM8507044 H3Y, MTBP, replicate 2 H3Y, MTBP,
- GSM8507045 H3Y, pMCM2, replicate 1 H3Y, pMCM2,
- GSM8507046 H3Y, pMCM2, replicate 2 H3Y, pMCM2,
- GSM8507047 H3Y, pRQ4, replicate 1 H3Y, pRQ4,
- GSM8507048 H3Y, pRQ4, replicate 2 H3Y, pRQ4,
- GSM8507049 H3Y, RQ4, replicate 1 H3Y, RQ4,
+ 171 more — browse all 211 samples with per-sample file links →
- GSE230396 Selective Enhancer Dependencies in MYC-Intact and MYC-Rearranged Germinal Center B-cell Diffuse Large B-cell Lymphoma 132 samples shares selective
- GSE102093 Direct DNA-RNA interactions dynamically decorate core functional elements within the human genome 40 samples shares interactions
- GSE276935 The activity of tertiary lymphoid structures in high grade serous ovarian cancer is governed by site, stroma, and cellular interactions 417 samples shares interactions
- GSE330891 Spatial and cell type specific molecular genetic investigations of inflammatory myopathies with selective perifascicular injury. 301 samples shares selective
- GSE331197 Spatial and cell type specific molecular genetic investigations of inflammatory myopathies with selective perifascicular injury [RNA] 300 samples shares selective
- GSE277500 Coordinated control of genome-nuclear lamina interactions by Topoisomerase 2B and Lamin B receptor (pA-DamID) 226 samples shares interactions
- GSE270126 Divergent medulloblastoma chromatin states disclose KDM2B as a selective dependency. 219 samples shares selective
- GSE271752 Macromolecular interactions dictate Polycomb-mediated epigenetic repression [ChIP-seq] 194 samples shares interactions
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.