Differential IRES-initiated translation during homeostatic stem cell differentiation and stress
RNA-seq (gene expression) · synthetic construct; Mus musculus · 36 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- synthetic construct; Mus musculus
- Samples
- 36 samples: 12 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE277603_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1162885 and SRA study SRP533643. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 36 samples.
How we read this: 12 replicated groups read from 36 sample titles; they account for 36 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8525858 Low IRES,Cap SLAM-LKS Replicate 1 Low IRES,Cap SLAM-LKS
- GSM8525859 Low IRES,Cap SLAM-LKS Replicate 2 Low IRES,Cap SLAM-LKS
- GSM8525860 Low IRES,Cap SLAM-LKS Replicate 3 Low IRES,Cap SLAM-LKS
- GSM8525861 Mid IRES,Cap SLAM-LKS Replicate 1 Mid IRES,Cap SLAM-LKS
- GSM8525862 Mid IRES,Cap SLAM-LKS Replicate 2 Mid IRES,Cap SLAM-LKS
- GSM8525863 Mid IRES,Cap SLAM-LKS Replicate 3 Mid IRES,Cap SLAM-LKS
- GSM8525864 High IRES,Cap SLAM-LKS Replicate 1 High IRES,Cap SLAM-LKS
- GSM8525865 High IRES,Cap SLAM-LKS Replicate 2 High IRES,Cap SLAM-LKS
- GSM8525866 High IRES,Cap SLAM-LKS Replicate 3 High IRES,Cap SLAM-LKS
- GSM8525867 Low IRES,Cap GMP Replicate 1 Low IRES,Cap GMP
- GSM8525868 Low IRES,Cap GMP Replicate 2 Low IRES,Cap GMP
- GSM8525869 Low IRES,Cap GMP Replicate 3 Low IRES,Cap GMP
- GSM8525870 Mid IRES,Cap GMP Replicate 1 Mid IRES,Cap GMP
- GSM8525871 Mid IRES,Cap GMP Replicate 2 Mid IRES,Cap GMP
- GSM8525872 Mid IRES,Cap GMP Replicate 3 Mid IRES,Cap GMP
- GSM8525873 High IRES,Cap GMP Replicate 1 High IRES,Cap GMP
- GSM8525874 High IRES,Cap GMP Replicate 2 High IRES,Cap GMP
- GSM8525875 High IRES,Cap GMP Replicate 3 High IRES,Cap GMP
- GSM8525876 Low IRES,Cap MEP Replicate 1 Low IRES,Cap MEP
- GSM8525877 Low IRES,Cap MEP Replicate 2 Low IRES,Cap MEP
- GSM8525878 Low IRES,Cap MEP Replicate 3 Low IRES,Cap MEP
- GSM8525879 Mid IRES,Cap MEP Replicate 1 Mid IRES,Cap MEP
- GSM8525880 Mid IRES,Cap MEP Replicate 2 Mid IRES,Cap MEP
- GSM8525881 Mid IRES,Cap MEP Replicate 3 Mid IRES,Cap MEP
- GSM8525882 High IRES,Cap MEP Replicate 1 High IRES,Cap MEP
- GSM8525883 High IRES,Cap MEP Replicate 2 High IRES,Cap MEP
- GSM8525884 High IRES,Cap MEP Replicate 3 High IRES,Cap MEP
- GSM8525885 Low IRES,Cap Replicate 1 Low IRES,Cap
- GSM8525886 Low IRES,Cap Replicate 2 Low IRES,Cap
- GSM8525887 Low IRES,Cap Replicate 3 Low IRES,Cap
- GSM8525888 Mid IRES,Cap Replicate 1 Mid IRES,Cap
- GSM8525889 Mid IRES,Cap Replicate 2 Mid IRES,Cap
- GSM8525890 Mid IRES,Cap Replicate 3 Mid IRES,Cap
- GSM8525891 High IRES,Cap Replicate 1 High IRES,Cap
- GSM8525892 High IRES,Cap Replicate 2 High IRES,Cap
- GSM8525893 High IRES,Cap Replicate 3 High IRES,Cap
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE297068 A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain 291 samples
- GSE274507 Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus 244 samples
- GSE99978 Thiol-linked alkylation for the metabolic sequencing of RNA 141 samples
- GSE216095 Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 87 samples
- GSE275724 GeoMx DSP- profiling of mouse spleen 67 samples
- GSE248680 Therapeutic application of circular RNA aptamers in a mouse model of psoriasis 40 samples
- GSE256215 Aberrant homeodomain-DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models 32 samples
- GSE220949 Reconstructing regulative progenitor behaviors in synthetic embryos 29 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.