Krill oil supplementation in vivo promotes increased fuel metabolism and protein synthesis in cultured human skeletal muscle cells
RNA-seq (gene expression) · human · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 16 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Krill oil supplementation in vivo promotes increased fuel metabolism and protein synthesis in cultured human skeletal muscle cellsFrontiers in nutrition · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE278505_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1167651 and SRA study SRP535903. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 16 sample titles: 16 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8547814 AA1_1_1
- GSM8547815 AA2_3_1
- GSM8547816 AA3_5_1
- GSM8547817 AA4_7_1
- GSM8547818 AA5_9_1
- GSM8547819 AA6_11_1
- GSM8547820 AA7_13_1
- GSM8547821 AA8_15_1
- GSM8547822 BB1_2_1
- GSM8547823 BB2_4_1
- GSM8547824 BB3_6_1
- GSM8547825 BB4_8_1
- GSM8547826 BB5_10_1
- GSM8547827 BB6_12_1
- GSM8547828 BB7_14_1
- GSM8547829 BB8_16_1
- GSE282668 TGF-β signaling promotes astroglial activation and TDP-43 proteinopathy in organoid models of frontotemporal lobar degeneration 54 samples shares promotes, protein
- GSE268092 TFE3 fusion proteins drive oxidative metabolism, ferroptosis resistance and general RNA synthesis in translocation renal cell carcinoma. [RNA-seq] 36 samples shares synthesis, protein
- GSE280973 Transcriptional Regulation of Protein Synthesis by Mediator Kinase Represents a Therapeutic Vulnerability in MYC-driven Medulloblastoma 20 samples shares synthesis, protein
- GSE302114 Mitochondrial One-Carbon Metabolism is Required for TGF-β-Induced Glycine Synthesis and Collagen Protein Production 18 samples shares synthesis, protein
- GSE304693 Specific SLC25 carriers regulate mitochondrial protein synthesis 12 samples shares synthesis, protein
- GSE289735 Alpha-ketoglutarate -mediated carnitine synthesis promotes homologous recombination via histone acetylation 12 samples shares synthesis, promotes
- GSE312197 MEK inhibition induces AXIN1 loss in colorectal cancer by mTOR associated suppression of protein synthesis 66 samples shares synthesis, protein
- GSE225012 The nuclear cap-binding complex safeguards stress-resistant protein synthesis and proliferation of stem cells 24 samples shares synthesis, protein
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.