Single cell RNA sequencing of TCF-1+ P14 precursor cells sorted 3.25 days after infection with LCMV Armstrong [scRNA-Seq BD Rhapsody]
Single-cell RNA-seq · mouse · 1 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Precursors of exhausted T cells are pre-emptively formed in acute infectionNature · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE278805_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1168959 and SRA study SRP536647. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE278803 Bulk RNA sequencing of PD1hi vs PD1low TCF-1+ P14 precursor cells sorted 7 days after infection with LCMV Armstrong [bulk RNA-seq] 10 samples shares tcf-1, lcmv, p14, precursor, armstrong, sorted
- GSE278804 Single cell RNA sequencing of TCF-1+ precursor cells reacting to LCMV gp33 vs np396 multimers sorted 30 days after infection with LCMV Armstrong [scRNA-Seq + TCR 10x] 12 samples shares tcf-1, lcmv, precursor, armstrong, scrna-seq, sorted
- GSE329359 Single cell RNA sequencing of gp33 tetramer-positive CD8 T cells sorted from the SI-LP and spleen of germ-free and SPF mice 16 days after LCMV Docile infection [scRNA-Seq 10x] 12 samples shares lcmv, scrna-seq, sorted
- GSE8678 Gene expression data from sorted IL-7Rhi/lo effector CD8 T cells on day 6/7 after LCMV armstrong infection 6 samples shares lcmv, armstrong, sorted
- GSE254211 Analysis of different mouse P14 CD8+T cell subset gene signatures in presence and absence of Tim-3+ Treg during LCMV CL13 infection 18 samples shares lcmv, p14
- GSE337539 scRNAseq of LCMV-specific P14 cells: WT, P2RX7-KO and NKG7-KO 8 samples shares lcmv, p14
- GSE270606 Single cell analysis of splenic control and ICOS deficient P14 cells from LCMV chronically infected mice 2 samples shares lcmv, p14
- GSE266432 CoMtb alters the immune landscape following Mtb infection [B6 Sp140-/- scRNA-Seq] 7 samples shares p14, scrna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.