scRNAseq of LCMV-specific P14 cells: WT, P2RX7-KO and NKG7-KO
Single-cell RNA-seq · mouse · 8 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 8 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE337539_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1490245 and SRA study SRP715301. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run Mayo 0410 … Mayo 0549 and carry no group information.
- GSM9857601 Mayo 0410
- GSM9857602 Mayo 0543
- GSM9857603 Mayo 0544
- GSM9857604 Mayo 0545
- GSM9857605 Mayo 0546
- GSM9857606 Mayo 0547
- GSM9857607 Mayo 0548
- GSM9857608 Mayo 0549
- GSE302184 RNA sequencing of WT and TrIP KO P14 TCR Tg T cells stimulated in vitro 18 samples shares p14
- GSE172279 Bulk RNAseq of Sort-purified IV- Primary (1M) or Quaternary (4M) Tcirc (IV- CD69-/CD103-) or Trm (IV- CD69+/CD103+) Memory P14 cells isolated from Spleen or Mediastinal Lymph Nodes 14 samples shares p14
- GSE278803 Bulk RNA sequencing of PD1hi vs PD1low TCF-1+ P14 precursor cells sorted 7 days after infection with LCMV Armstrong [bulk RNA-seq] 10 samples shares p14
- GSE290461 Transcriptional differences between freshly isolated and long-lived naïve P14 CD8 T cells prior to infection 8 samples shares p14
- GSE285178 Effect of depletion of Bcor, Zc3h12a or both on gene expression of P14 CD8 T cells [RNA-seq] 8 samples shares p14
- GSE294151 Expression profiling of mouse testes on postnatal day 14 (P14) with conditional knockout of Rif1 in pre-meiotic germ cells. 6 samples shares p14
- GSE290460 Transcriptional differences between effector cells derived from freshly isolated and long-lived naïve P14 CD8 T cells on day 5 post-infection. 6 samples shares p14
- GSE285183 Effect of depletion of Bcor, Zc3h12a or both on gene expression of P14 CD8 T cells at single cell level [scRNA-seq] 4 samples shares p14
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.