ChIP-seq Profiling of RXRα in Proliferating C2C12 Myoblasts
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 1 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE279060_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1170277 and SRA study SRP537265. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE255762 ChIP-seq for PPARg, RXRa, and H3K27Ac in inflammation-associated unsaturated fatty acid-supplemented Th2 cells 25 samples shares rxr, chip-seq
- GSE254885 Transcriptome profile of C2C12 wild-type and Fam134b knockout myoblasts and differentiated myotubes 16 samples shares c2c12, myoblasts
- GSE302488 PFOS perturbs metabolism in C2C12 skeletal myoblasts 12 samples shares c2c12, myoblasts
- GSE314495 effect of depletion of Znf143 on gene expression of C2C12 myoblasts with or without induction for myogenic differentiation 12 samples shares c2c12, myoblasts
- GSE272316 Analysis of deregulated genes upon Septin9 depletion in C2C12 and primary isolated myoblasts 8 samples shares c2c12, myoblasts
- GSE15895 Expression data from C2C12 myoblasts transduced with PRDM16 or vector 6 samples shares c2c12, myoblasts
- GSE260946 Gene expression profile at single cell level of C2C12 myoblasts bearing human LMNA gene with mutations WT, R482L 3 samples shares c2c12, myoblasts
- GSE277346 Genome-wide chromatin state in myoblasts lacking Daxx [ChIP-Seq] 6 samples shares myoblasts, chip-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.