Systematic characterization of the composition and dynamics of processing body-associated mRNAs [dataset 1]
RNA-seq (gene expression) · human · 458 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 458 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Systematic characterization of the composition and dynamics of processing body-associated mRNAsNature communications · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE279168_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1171008 and SRA study SRP537596. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 458 more — browse all 458 samples with per-sample file links →
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- GSE279285 Systematic characterization of the composition and dynamics of processing body-associated mRNAs 597 samples shares body-associated, composition, systematic, processing, dynamics, mrnas
- GSE269274 Systematic analyses of transposable element expression dynamics using long read RNA-seq in pluripotent stem cells and germ lineage cells [subcellular RNA-seq] 46 samples shares systematic, dynamics
- GSE269273 Systematic analyses of transposable element expression dynamics using long read RNA-seq in pluripotent stem cells and germ lineage cells [bulk RNA-seq] 16 samples shares systematic, dynamics
- GSE313042 Systematic Bias Introduced by Ficoll-Based Isolation in AML Sample Composition and Downstream Analyses 10 samples shares composition, systematic
- GSE272219 Profiling transcriptome composition and dynamics within nuclear compartments using SLAM-RT&Tag 140 samples shares composition, dynamics
- GSE274188 RAPIDASH: Tag-free enrichment of ribosome-associated proteins reveals compositional dynamics in embryonic tissues, cancer cells, and macrophages [RNA-Seq and Ribo-Seq] 12 samples shares composition, dynamics
- GSE280530 Systematic identification and characterization of high efficiency Cas9 guide RNAs for therapeutic targeting of ADAR 54 samples shares systematic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.