A unified molecular approach for spatial epigenome, transcriptome, and cell lineages

Direct links to NCBI, no account and no request form: the whole study as GSE279771_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1174228 and SRA study SRP539234. Searching any of these in the dataset finder brings you back here.

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+ 4 more — browse all 4 samples with per-sample file links →

• GSE267117 scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [cellline_scHiCAR] 34 samples
• GSE240326 An in situ method for identification of transcriptome-wide protein-RNA interactions in cells 78 samples
• GSE333685 Vascular smooth muscle cell state trajectories mediate molecular mechanisms of coronary disease risk 64 samples
• GSE241849 Absolute quantitative and base-resolution sequencing reveals comprehensive landscape of pseudouridine across the human transcriptome 54 samples
• GSE307351 Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions 890 samples
• GSE274495 The remodeling of bivalent chromatin is essential for mouse peri-implantation embryogenesis. 421 samples
• GSE289420 Astrocyte-derived cholesterol drives synaptic gene expression in developing neurons and reciprocal astrocytic transcriptional programs 416 samples
• GSE320162 Minimizing far-extending chromatin perturbation in genome editing preserves stem cell identity [RNA-Seq] 347 samples

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