← BioTransfer GEO Dataset Finder
GEO series

Heparin prevents AKI to CKD transition via HDAC1-mediated anti-inflammatory effect independent from its anticoagulant properties

GSE280033 Mus musculus (mouse) RNA-seq (gene expression) 9 samples Submitted 2026/06/30 Platform GPL34290
At a glance

RNA-seq (gene expression) · mouse · 9 samples

What it is
RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
Organism
Mus musculus (mouse)
Samples
9 samples
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Summary (written by the submitters)
Aim: This study aimed to investigate the therapeutic potential of heparin, a traditional anticoagulant, in the acute kidney injury (AKI) to chronic kidney disease (CKD) transition. Main methods: Male C57BL/6 mice were subjected to unilateral ischemia-reperfusion (uIR)-induced and folic acid (FA)-induced AKI to CKD mouse model in vivo.
Read the full summary ↓
Heparin or chemically modified variant devoid of anticoagulant activity (N-Acetyl heparin sodium salt) was administered subcutaneously. Histological analyses, including H&E staining, Masson’s trichrome staining, immunofluorescence, and immunoblotting, were employed to assess renal tubular cell injury, interstitial fibrosis and inflammatory cell infiltration in the kidneys. RNA sequencing of murine kidney cortex tissues was performed to elucidate the mechanistic actions of heparin. Additionally, drug affinity responsive target stability (DARTS) assays and co-immunoprecipitation were conducted to explore the interaction between HDAC1 and heparin. Key findings: We found that low-dose heparin treatment significantly mitigates the AKI to CKD transition, primarily through the suppression of inflammation responses. Mechanistically, heparin binds to HDAC1 in renal tubular epithelial cells, reducing the acetylation of p65,which in turn downregulates the expression of inflammatory factors. Notably, this anti-inflammatory effect of heparin is independent of its anticoagulant activity, as the interaction between heparin and HDAC1 is unrelated to its anticoagulant domain. Furthermore, the chemically modified variant of heparin (N-Acetyl heparin sodium salt), lacking anticoagulant properties, demonstrated a similar protective effect. Significance: Our findings suggest that low-dose heparin, along with its non-anticoagulant derivatives, holds potential as a novel therapeutic approach to attenuate the progression from AKI to CKD.
This dataset
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280033_RAW.tar (it can run to tens of gigabytes).

3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA1175995 and SRA study SRP540150. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.

+ 9 more — browse all 9 samples with per-sample file links →

Datasets on a similar topic

Search all mouse RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.