GEO series
Itga8+ MSCs in the endosteal niche contribute to the maintenance of hematopoietic stem cell self-renewal capacity.
GSE280158
Mus musculus
Expression profiling by high throughput sequencing
12 samples
2026/05/27
GPL19057
Summary
The bone marrow (BM) niche is a specialized microenvironment critical for the maintenance and regulation of hematopoietic stem cells (HSCs). Different niches in the BM support HSCs, and among them we analyzed the endosteal niche. The endosteal niche is formed by Alcam+ Sca-1- osteoblasts, Alcam- Sca-1+ mesenchymal stem cells (MSCs), and Alcam- Sca-1- cells. Using single-cell gene expression analysis, we identified a unique subpopulation within the Alcam+ Sca-1- bone-lining cells (BLCs) that lacked osteoblast markers. This subpopulation was found to be a novel MSC with specific expression of the 8-integrin (Itga8). We compared gene expression between Itga8+ Alcam+ Sca-1- MSCs (Itga8+ MSCs), Itga8- Alcam+ Sca-1- BLCs, Alcam- Sca-1+ MSCs, and CD51+ CD140a+ MSCs to investigate the characteristics of Itga8+ MSCs. Itga8+ MSCs showed a distinct gene expression profile compared with the others, demonstrating that Itga8+ MSCs are different from previously reported BLCs and MSCs. Furthermore, Itga8+ MSCs were found to secrete extracellular matrix (ECM) that regulates HSCs, and therefore, Itga8+ MSCs are important MSCs that provide the ECM required to maintain HSCs within the endosteal niche.
Download
NCBI GEO page ↗
{# Names what the click gives you. "Open in finder" meant nothing to a
visitor who arrived from a search engine and has never seen the tool. #}
Find more
mouse RNA-seq datasets →
Similar datasets
- GSE292862 Modelling mouse embryogenesis from chemically induced totipotent stem cells 22 samples
- GSE185862 A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation 95 samples
- GSE304862 Semaglutide and exercise synergy in obesity: preserving muscle mass and uncovering organ crosstalk 209 samples
- GSE293315 MRPGRX2 Antagonist Treatment Prevents Inflammation and Disease in a Mouse Model of Atopic Dermatitis Dataset 2 35 samples
- GSE255837 Dysregulation of the Normal Wound Healing Cascade in Volumetric Muscle Loss Injury 30 samples
- GSE341948 Multi-tissue transcriptomic landscape reveals synergistic mechanisms of exercise and GLP-1 agonist in ameliorating diabetic phenotypes in db/db mice 12 samples
- GSE337190 CAR-NKT cells induce low cytokine release syndrome by targeting hyperinflammatory macrophages with mitigation from GM-SCF inhibition. 24 samples
- GSE306116 Caspase-3 Control of RNA Splicing and Mitochondrial Dynamics in Microglia during Parkinson’s Disease [RNA-Seq] 12 samples
Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.