Distinct maternofetal immune signatures delineate preterm birth onset following urinary tract infection
RNA-seq (gene expression) · mouse · 60 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 60 samples: 28 × P vs 18 × B vs 14 × UGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280297_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1177788 and SRA study SRP540816. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 60 samples.
How we read this: 3 replicated groups read from 60 sample titles; they account for 60 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8594270 B1 B
- GSM8594271 B2 B
- GSM8594272 B3 B
- GSM8594273 B4 B
- GSM8594274 B5 B
- GSM8594275 B6 B
- GSM8594276 B7 B
- GSM8594277 B8 B
- GSM8594278 B9 B
- GSM8594279 B10 B
- GSM8594280 B11 B
- GSM8594281 B12 B
- GSM8594282 B13 B
- GSM8594283 B14 B
- GSM8594284 B15 B
- GSM8594285 B16 B
- GSM8594286 B17 B
- GSM8594287 B18 B
- GSM8594288 P1 P
- GSM8594289 P2 P
- GSM8594290 P3 P
- GSM8594291 P4 P
- GSM8594292 P5 P
- GSM8594293 P6 P
- GSM8594294 P7 P
- GSM8594295 P8 P
- GSM8594296 P9 P
- GSM8594297 P10 P
- GSM8594298 P11 P
- GSM8594299 P12 P
- GSM8594300 P13 P
- GSM8594301 P14 P
- GSM8594302 P15 P
- GSM8594303 P16 P
- GSM8594304 P17 P
- GSM8594305 P18 P
- GSM8594306 P19 P
- GSM8594307 P20 P
- GSM8594308 P21 P
- GSM8594309 P22 P
+ 20 more — browse all 60 samples with per-sample file links →
- GSE316576 Altered Nephron Progenitor Cell Dynamics Drive Long-Term Kidney Abnormalities Following Preterm Birth in Mice. 32 samples shares following, preterm, birth
- GSE306097 Distinct immunometabolic signatures of type 1 versus type 2 diabetes in a murine model of myocardial infarction 55 samples shares signatures, distinct
- GSE301216 Distinct lung functional, histological and cell senescence signatures in the single vs repetitive bleomycin mouse model of idiopathic pulmonary fibrosis 53 samples shares signatures, distinct
- GSE306514 Chemokine receptor expression patterns delineate distinct interstitial macrophage subsets in the lung and define a trajectory from monocytes to mature macrophages, bulk RNA-sequencing data 24 samples shares delineate, distinct
- GSE337822 Transcriptomic Signatures Reveal Overlapping Shared and DistinctYet State-Specific Preoptic Neuronal Ensembles Activated by Anesthesia and Sleep 20 samples shares signatures, distinct
- GSE211550 Macrophages adopt mural cell function and marker expression for vascular support following ischemia 1509 samples shares following
- GSE255212 Transcriptomic Signatures of WNT-Driven Pathways and Granulosa Cell-Oocyte Interaction during Primordial Follicle Activation 762 samples shares signatures
- GSE291420 Deciphering the Transcriptomic Signatures of Aging Across Organs in Mice 270 samples shares signatures
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.