Bone marrow endosteum houses Hedgehog-susceptible Dlx5-expressing osteoblast precursor cells
Single-cell RNA-seq · mouse · 1 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280325_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1177850 and SRA study SRP540854. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE280669 Bone marrow endosteum houses Hedgehog-susceptible Dlx5-expressing osteoblast precursor cells [Fgfr3CE_Cxcl12GFP] 1 samples shares hedgehog-susceptible, dlx5-expressing, osteoblast, endosteum, precursor, marrow, houses, bone
- GSE242742 Effect of verapamil treatment on gene expression of osteoblast differentiated from mouse bone marrow-derived mesenchymal stem cells 6 samples shares osteoblast, marrow, bone
- GSE309814 Effect of Recombinant ApoE on Gene Expression During Osteoblast Differentiation of Mouse Bone Marrow Stromal Cells (BMSCs) 6 samples shares osteoblast, marrow, bone
- GSE324013 Conditional deletion of Wnt5a in myeloid osteoclast precursors results in low bone mass via disruption of osteoblast migration and focal adhesion dynamics 6 samples shares osteoblast, precursor, bone
- GSE307904 ZM-306416 prevents ovariectomy-induced bone loss by promoting osteoblastogenesis and inhibiting osteoclastogenesis - bone marrow-derived macrophages 6 samples shares osteoblast, marrow, bone
- GSE226615 miR-324 regulates both osteoblast and osteoclast differentiation and function to control bone homeostasis 36 samples shares osteoblast, bone
- GSE233809 miR-324 regulates both osteoblast and osteoclast differentiation and function to control bone homeostasis 10 samples shares osteoblast, bone
- GSE251951 O-GlcNAcylation Mediates Wnt-stimulated Bone Formation via Rewiring Aerobic Glycolysis in Osteoblast-lineage Cells 9 samples shares osteoblast, bone
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.