Differentially expressed genes after transfection of miRNA in a human cancer cell line (miR-195-5p and miR-195-3p)
RNA-seq (gene expression) · human · 3 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- MicroRNA Signatures in Lung Adenocarcinoma Metastases: Exploring the Oncogenic Targets of Tumor-Suppressive miR-195-5p and miR-195-3pCancers · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE281258_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1182818 and SRA study SRP543641. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE281585 Differentially expressed genes after transfection of siRNA in a human cancer cell line (siANLN and siFAM111B) 6 samples shares differentially, transfection, expressed, line
- GSE284019 Differentially Expressed Genes Between High-Metastatic LOVO-HM and Wild-Type LOVO Colorectal Cancer Cell Lines 6 samples shares differentially, expressed, line
- GSE293091 The differentially expressed genes after overexpression of NINJ1 in gastric cancer cell lines 6 samples shares differentially, expressed, line
- GSE218844 Screening radiation-differentially expressed circular RNAs and establishing dose classification models in the human lymphoblastoid cell line AHH-1 9 samples shares differentially, expressed, line
- GSE308877 The differentially expressed genes after treatment of 5-AZA-CdR in OSCC cell lines 4 samples shares differentially, expressed, line
- GSE279412 Differentially Expressed Genes in C-33A and CaSki Cells Overexpressing miR-124-3p, miR-23b-3p, or miR-218-5p Modulate Processes and Pathways Involved in Cervical Cancer Progression 23 samples shares differentially, expressed
- GSE308395 Identification of Differentially Expressed Genes and Associated Immune Cell Types In South African Gallbladder Cancer Patients 10 samples shares differentially, expressed
- GSE100363 Identification of differentially expressed circRNA in gallbladder cancer compared with matched normal tissue 8 samples shares differentially, expressed
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.