Transcriptome comparison of RhoP23H/+ mouse retina with wildtype at different age
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Compensation of inner retina to early-stage photoreceptor degeneration in a Rho(P23H/+) mouse model of retinitis pigmentosaExperimental eye research · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE281959_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1186154 and SRA study SRP545291. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8633565 RNA-seq of mouse retina: P23H-1m-1 P23H-1m
- GSM8633566 RNA-seq of mouse retina: P23H-1m-2 P23H-1m
- GSM8633567 RNA-seq of mouse retina: P23H-1m-3 P23H-1m
- GSM8633568 RNA-seq of mouse retina: P23H-3m-1 P23H-3m
- GSM8633569 RNA-seq of mouse retina: P23H-3m-2 P23H-3m
- GSM8633570 RNA-seq of mouse retina: P23H-3m-3 P23H-3m
- GSM8633571 RNA-seq of mouse retina: P23H-6m-1 P23H-6m
- GSM8633572 RNA-seq of mouse retina: P23H-6m-2 P23H-6m
- GSM8633573 RNA-seq of mouse retina: P23H-6m-3 P23H-6m
- GSM8633574 RNA-seq of mouse retina: WT-1m-1 WT-1m
- GSM8633575 RNA-seq of mouse retina: WT-1m-2 WT-1m
- GSM8633576 RNA-seq of mouse retina: WT-1m-3 WT-1m
- GSM8633577 RNA-seq of mouse retina: WT-3m-1 WT-3m
- GSM8633578 RNA-seq of mouse retina: WT-3m-2 WT-3m
- GSM8633579 RNA-seq of mouse retina: WT-3m-3 WT-3m
- GSM8633580 RNA-seq of mouse retina: WT-6m-1 WT-6m
- GSM8633581 RNA-seq of mouse retina: WT-6m-2 WT-6m
- GSM8633582 RNA-seq of mouse retina: WT-6m-3 WT-6m
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.