JUNB O-GlcNAcylation-mediated Promoter Accessibility of Metabolic Genes Modulates Distinct Epithelial Lineage in Pulmonary Fibrosis [ipf_saec_bulk]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 24 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 24 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- JUNB O-GlcNAcylation-Mediated Promoter Accessibility of Metabolic Genes Modulates Distinct Epithelial Lineage in Pulmonary FibrosisAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE282322_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1188128 and SRA study SRP546228. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 24 sample titles: 24 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8641352 Control untreated 1, ATAC-seq
- GSM8641353 Control untreated 2, ATAC-seq
- GSM8641354 Control untreated 3, ATAC-seq
- GSM8641355 Control IPFrc 1, ATAC-seq
- GSM8641356 Control IPFrc 2, ATAC-seq
- GSM8641357 Control IPFrc 3, ATAC-seq
- GSM8641358 IPF untreated 1, ATAC-seq
- GSM8641359 IPF untreated 2, ATAC-seq
- GSM8641360 IPF untreated 3, ATAC-seq
- GSM8641361 IPF IPFrc 1, ATAC-seq
- GSM8641362 IPF IPFrc 2, ATAC-seq
- GSM8641363 IPF IPFrc 3, ATAC-seq
- GSM8641364 Control untreated 1, RNA-seq
- GSM8641365 Control untreated 2, RNA-seq
- GSM8641366 Control untreated 3, RNA-seq
- GSM8641367 Control IPFrc 1, RNA-seq
- GSM8641368 Control IPFrc 2, RNA-seq
- GSM8641369 Control IPFrc 3, RNA-seq
- GSM8641370 IPF untreated 1, RNA-seq
- GSM8641371 IPF untreated 2, RNA-seq
- GSM8641372 IPF untreated 3, RNA-seq
- GSM8641373 IPF IPFrc 1, RNA-seq
- GSM8641374 IPF IPFrc 2, RNA-seq
- GSM8641375 IPF IPFrc 3, RNA-seq
- GSE299702 [RelA ChIP-seq]: Characterization of transcriptional and chromatin accessibility landscape of human bronchial epithelial cells treated with synergistic immunostimulatory ligands. 13 samples shares accessibility, epithelial
- GSE326573 T-cell Multiomic Analysis Identifies Subsets and Mechanisms of Interaction with Epithelial Cells in Idiopathic Pulmonary Fibrosis 59 samples shares epithelial, pulmonary
- GSE329420 Endothelial exosomes remodel chromatin accessibility and superenhancer in cancer cells to promote liver metastatic colonization 26 samples shares accessibility
- GSE277922 Chromatin Accessibility Analysis Reveals Regulatory Dynamics in hESC-Derived Kidney Organoids 25 samples shares accessibility
- GSE251754 Simultaneous profiling of full-length RNA transcripts and chromatin accessibility within single cells of human retinal organoids 10 samples shares accessibility
- GSE292059 Inflammatory Epithelial and Macrophage Pathways Underlie Residual Asthma Exacerbations in Urban Children Treated with Mepolizumab 965 samples shares epithelial
- GSE275647 Role of Cancer-Associated Fibroblasts in Prognostic Stratification of Advanced-Stage Gastric Cancer through Interacting with Endothelial and Malignant Epithelial Cells [AGC RNA-seq] 216 samples shares epithelial
- GSE291386 Chromatin accessibility profiling of HSPC-derived erythroblast differentiation [ATAC-seq] 165 samples shares accessibility
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.