Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 10 × Mouse neocortex, single-cell gene expression library, vs 10 × Mouse neocortex, single-cell gRNA expression library,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disordersCell · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE282731_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1190082 and SRA study SRP547243. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 20 samples.
How we read this: 2 replicated groups read from 20 sample titles; they account for 20 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8649383 Mouse neocortex, single-cell gene expression library, batch 1 Mouse neocortex, single…
- GSM8649384 Mouse neocortex, single-cell gene expression library, batch 2 Mouse neocortex, single…
- GSM8649385 Mouse neocortex, single-cell gene expression library, batch 3 Mouse neocortex, single…
- GSM8649386 Mouse neocortex, single-cell gene expression library, batch 4 Mouse neocortex, single…
- GSM8649387 Mouse neocortex, single-cell gene expression library, batch 5 Mouse neocortex, single…
- GSM8649388 Mouse neocortex, single-cell gene expression library, batch 6 Mouse neocortex, single…
- GSM8649389 Mouse neocortex, single-cell gene expression library, batch 7 Mouse neocortex, single…
- GSM8649390 Mouse neocortex, single-cell gene expression library, batch 8 Mouse neocortex, single…
- GSM8649391 Mouse neocortex, single-cell gene expression library, batch 9 Mouse neocortex, single…
- GSM8649392 Mouse neocortex, single-cell gene expression library, batch 10 Mouse neocortex, single…
- GSM8649393 Mouse neocortex, single-cell gRNA expression library, batch 1 Mouse neocortex, single…
- GSM8649394 Mouse neocortex, single-cell gRNA expression library, batch 2 Mouse neocortex, single…
- GSM8649395 Mouse neocortex, single-cell gRNA expression library, batch 3 Mouse neocortex, single…
- GSM8649396 Mouse neocortex, single-cell gRNA expression library, batch 4 Mouse neocortex, single…
- GSM8649397 Mouse neocortex, single-cell gRNA expression library, batch 5 Mouse neocortex, single…
- GSM8649398 Mouse neocortex, single-cell gRNA expression library, batch 6 Mouse neocortex, single…
- GSM8649399 Mouse neocortex, single-cell gRNA expression library, batch 7 Mouse neocortex, single…
- GSM8649400 Mouse neocortex, single-cell gRNA expression library, batch 8 Mouse neocortex, single…
- GSM8649401 Mouse neocortex, single-cell gRNA expression library, batch 9 Mouse neocortex, single…
- GSM8649402 Mouse neocortex, single-cell gRNA expression library, batch 10 Mouse neocortex, single…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.