MOZ and HBO1 Histone Acetyltransferase Complexes Are Molecular Dependencies and Therapeutic Targets in NUP98-Rearranged Acute Myeloid Leukemia
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 70 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Topic
- Acute myeloid leukemiaThis series is part of our curated briefing on it.
- Samples
- 70 samples: 70 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- KAT6A and KAT7 Histone Acetyltransferase Complexes Are Molecular Dependencies and Therapeutic Targets in NUP98-Rearranged Acute Myeloid LeukemiaCancer discovery · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE283532_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1194465 and SRA study SRP549529. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 70 sample titles: 70 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8665956 mm202C_ChIP_Brpf1_Combo_72h_REP1_240904_TGACCA_S4
- GSM8665957 mm202C_ChIP_Brpf1_DMSO_72h_REP1_240904_ATCACG_S1
- GSM8665958 mm202C_ChIP_Brpf1_PF9363_500nM_72h_REP1_240904_TTAGGC_S3
- GSM8665959 mm202C_ChIP_Brpf1_SNDX_2uM_72h_REP1_240904_CGATGT_S2
- GSM8665960 mm202C_ChIP_HA_Combo_72h_REP1_240904_ACTTGA_S8
- GSM8665961 mm202C_ChIP_HA_DMSO_72h_REP1_240904_ACAGTG_S5
- GSM8665962 mm202C_ChIP_HA_PF9363_500nM_72h_REP1_240904_CAGATC_S7
- GSM8665963 mm202C_ChIP_HA_SNDX_2uM_72h_REP1_240904_GCCAAT_S6
- GSM8665964 mm202C_ChIP_input_Combo_72h_REP1_240904_GTTTCG_S20
- GSM8665965 mm202C_ChIP_input_DMSO_72h_REP1_240904_GTCCGC_S17
- GSM8665966 mm202C_ChIP_input_PF9363_500nM_72h_REP1_240904_GTGGCC_S19
- GSM8665967 mm202C_ChIP_input_SNDX_2uM_72h_REP1_240904_GTGAAA_S18
- GSM8665968 mm202C_ChIP_MLL1_Combo_72h_REP1_240904_CCGTCC_S16
- GSM8665969 mm202C_ChIP_MLL1_DMSO_72h_REP1_240904_AGTCAA_S13
- GSM8665970 mm202C_ChIP_MLL1_PF9363_500nM_72h_REP1_240904_ATGTCA_S15
- GSM8665971 mm202C_ChIP_MLL1_SNDX_2uM_72h_REP1_240904_AGTTCC_S14
- GSM8665972 mm202C_RNA_DMSO_72h_REP1_240805_AGTCAA_S1
- GSM8665973 mm202C_RNA_DMSO_72h_REP2_240805_AGTTCC_S2
- GSM8665974 mm202C_RNA_DMSO_72h_REP3_240805_ATGTCA_S3
- GSM8665975 mm202C_RNA_PF9363_500nM_72h_REP1_240805_GTGAAA_S7
- GSM8665976 mm202C_RNA_PF9363_500nM_72h_REP2_240805_GTGGCC_S8
- GSM8665977 mm202C_RNA_PF9363_500nM_72h_REP3_240805_GTTTCG_S9
- GSM8665978 mm202C_RNA_SNDX_2uM_72h_REP1_240805_CCGTCC_S4
- GSM8665979 mm202C_RNA_SNDX_2uM_72h_REP2_240805_GTAGAG_S5
- GSM8665980 mm202C_RNA_SNDX_2uM_72h_REP3_240805_GTCCGC_S6
- GSM8665981 mm202C_RNA_SNDX_2uM_PF9363_500nM_72h_REP1_240805_CGTACG_S10
- GSM8665982 mm202C_RNA_SNDX_2uM_PF9363_500nM_72h_REP2_240805_GAGTGG_S11
- GSM8665983 mm202C_RNA_SNDX_2uM_PF9363_500nM_72h_REP3_240805_GGTAGC_S12
- GSM8665984 mm59_hsNUP98r_RNA_vehicle_54d_REP1_231031_TGACCA_S1
- GSM8665985 mm59_hsNUP98r_RNA_vehicle_54d_REP2_231031_ACAGTG_S2
- GSM8665986 mm61_hsNUP98r_RNA_vehicle_54d_REP1_231031_GCCAAT_S3
- GSM8665987 mm61_hsNUP98r_RNA_vehicle_54d_REP2_231031_CAGATC_S4
- GSM8665988 mm64_hsNUP98r_RNA_vehicle_54d_REP1_231031_ACTTGA_S5
- GSM8665989 mm64_hsNUP98r_RNA_vehicle_54d_REP2_231031_GATCAG_S6
- GSM8665990 mm73_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP1_231031_TAGCTT_S7
- GSM8665991 mm73_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP2_231031_GGCTAC_S8
- GSM8665992 mm74_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP1_231031_AGTCAA_S9
- GSM8665993 mm74_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP2_231031_CTTGTA_S10
- GSM8665994 mm75_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP1_231031_AGTTCC_S11
- GSM8665995 mm75_hsNUP98r_RNA_PF9363_3mpk-1mo_54d_REP2_231031_ATGTCA_S12
+ 30 more — browse all 70 samples with per-sample file links →
- GSE137851 The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia 387 samples same disease briefing · shares leukemia
- GSE270185 Repurposing CD19-directed immunotherapies for pediatric t(8;21) acute myeloid leukemia 249 samples same disease briefing · shares leukemia
- GSE137574 Kevetrin induces apoptosis in TP53 wild-type and mutant acute myeloid leukemia cells 24 samples same disease briefing · shares leukemia
- GSE303795 Halofuginone exerts broad-spectrum cytotoxic effects by regulating p-eIF2α-S100A8/A9-calcium signaling, inhibiting global protein synthesis, and reversing the resistance of idarubicin in acute myeloid leukemia 6 samples same disease briefing · shares leukemia
- GSE129437 Genome-wde mapping of BRD9 binding sites and gene expression changes upon BRD9 knockdown 6 samples same disease briefing
- GSE122515 Bonn Dataset 3 of meta-analysis on AML classification, RNAseq dataset 0 samples same disease briefing
- GSE303627 MYST acetyltransferases are a targetable therapeutic vulnerability in SETBP1-mutant leukemia [CUT&Run] 46 samples shares acetyltransferase, therapeutic, leukemia
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.