Compromised Intestinal Barrier Resilience to Disruption in People with HIV
RNA-seq (gene expression) · human · 59 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 59 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE284762_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1200607 and SRA study SRP552656. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 59 more — browse all 59 samples with per-sample file links →
- GSE284755 Compromised Intestinal Barrier Resilience to Disruption in People with HIV [colon] 30 samples shares hiv, compromised, intestinal, resilience, disruption, barrier, people
- GSE274848 Association of smoking with neurocognition, inflammatory and myeloid cell activation profiles in people with HIV on ART 165 samples shares hiv, people
- GSE290636 RNAseq analysis of blood specimens from ART-suppressed people with HIV prior to analytical treatment interruption 74 samples shares hiv, people
- GSE230738 Dysfunctional effector memory CD8 T cells in the bronchoalveolar compartment of people living with HIV 71 samples shares hiv, people
- GSE332711 CD4/CD8 ratio is associated with structural reorganization of vaccine-induced immune responses in people living with HIV 60 samples shares hiv, people
- GSE231628 Dysfunctional effector memory CD8 T cells in the bronchoalveolar compartment of people living with HIV 33 samples shares hiv, people
- GSE313894 Single cell characterization of the gastrointestinal HIV reservoir reveals heterogeneous cellular phenotypes. 68 samples shares hiv, intestinal
- GSE266455 hiv-seq reveals global host gene expression differences between hiv-transcribing cells from viremic and suppressed people with hiv 48 samples shares hiv, people
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.