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The emergence of multiple testicular cell lineages in human stem cell-derived testis-like organoids [RNA-Seq]

GSE285050 Homo sapiens Expression profiling by high throughput sequencing 7 samples Submitted 2026/02/24 Platform GPL24676
Summary
Reproductive development is a complex process orchestrated by precise gene expression and cellular interactions. Disruption to this process can result in Differences of Sex Development (DSDs) which occur in approximately 1-2% of live births. We have previously developed a protocol to differentiate human induced pluripotent stem cells (hiPSCs) into testis-like organoids as a model to study the molecular mechanisms underlying reproductive development and DSD. Here, we performed bulk and single-cell RNA sequencing on testis-like organoids to investigate their transcriptional landscape. Transcriptomic analysis revealed six cell clusters expressing markers associated with bipotential, early Sertoli, and testicular interstitial cells. To address the limited emergence of mature cell types, we generated a doxycycline-inducible NR5A1/SF1 hiPSC line, which successfully triggered the expression of Leydig cell markers upon overexpression. Our findings provide a comprehensive transcriptional profile of hiPSC-derived testis-like organoids, offering insights into human fetal gonadal development and a novel disease modelling system for DSDs.
Published in
The emergence of multiple testicular cell lineages in human stem cell-derived testis-like organoids
Pachernegg S, Robevska G, Ferreira LGA et al. · Development (Cambridge, England) 2026 · PMID 41725354 · doi:10.1242/dev.204772
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Direct links to NCBI, no account and no request form: the whole study as GSE285050_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 7 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1201120 and SRA study SRP552969. Searching any of these in the dataset finder brings you back here.

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