Bulk muscle RNA-sequencing of mice co-exposed to simvastatin and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)
RNA-seq (gene expression) · mouse · 60 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 60 samples: 60 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE285071_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1201145 and SRA study SRP552993. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 60 sample titles: 60 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8696009 109
- GSM8696010 111
- GSM8696011 112
- GSM8696012 113
- GSM8696013 114
- GSM8696014 115
- GSM8696015 116
- GSM8696016 117
- GSM8696017 118
- GSM8696018 119
- GSM8696019 121
- GSM8696020 122
- GSM8696021 123
- GSM8696022 124
- GSM8696023 126
- GSM8696024 127
- GSM8696025 128
- GSM8696026 129
- GSM8696027 130
- GSM8696028 131
- GSM8696029 132
- GSM8696030 133
- GSM8696031 134
- GSM8696032 135
- GSM8696033 136
- GSM8696034 137
- GSM8696035 138
- GSM8696036 140
- GSM8696037 142
- GSM8696038 143
- GSM8696039 144
- GSM8696040 163
- GSM8696041 165
- GSM8696042 _35
- GSM8696043 61
- GSM8696044 62
- GSM8696045 63
- GSM8696046 64
- GSM8696047 65
- GSM8696048 67
+ 20 more — browse all 60 samples with per-sample file links →
- GSE272970 Bulk liver RNA-sequencing of mice co-exposed to simvastatin and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) 60 samples shares tcdd, 8-tetrachlorodibenzo-p-dioxin, rna-sequencing, simvastatin, co-exposed, bulk
- GSE254121 Time-Course Analysis of Hepatic Single-Nuclei RNA-Sequencing in Mice Treated with 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) 42 samples shares tcdd, 8-tetrachlorodibenzo-p-dioxin, rna-sequencing
- GSE272652 Bulk RNA-sequencing of kidneys from male C57BL/6 mice subacutely exposed to TCDD. 40 samples shares tcdd, rna-sequencing, bulk
- GSE247476 Bulk RNA-sequencing of synovial macrophages (Fcgr2b-KO mice) 17 samples shares rna-sequencing, bulk
- GSE274496 Bulk RNA-sequencing of Meibomian glands from K5-rtTA tetO-GLI2DN mice and littermate controls 6 samples shares rna-sequencing, bulk
- GSE261869 NAD+ prevents chronic kidney disease by activating renal tubular metabolism - bulk RNA-sequencing 32 samples shares rna-sequencing, bulk
- GSE306514 Chemokine receptor expression patterns delineate distinct interstitial macrophage subsets in the lung and define a trajectory from monocytes to mature macrophages, bulk RNA-sequencing data 24 samples shares rna-sequencing, bulk
- GSE247475 Bulk RNA-sequencing of synovial macrophages (wild-type) 18 samples shares rna-sequencing, bulk
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.