Astrocyte molecular changes during basolateral amygdala-related emotional behaviors
RNA-seq (gene expression) · mouse · 98 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 98 samples: 22 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE285150_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1201265 and SRA study SRP553088. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 98 samples.
How we read this: 22 replicated groups read from 98 sample titles; they account for 98 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8697322 Amygdala Input Replicate 1 Amygdala Input
- GSM8697323 Amygdala Input Replicate 2 Amygdala Input
- GSM8697324 Amygdala Input Replicate 3 Amygdala Input
- GSM8697325 Amygdala Input Replicate 4 Amygdala Input
- GSM8697326 Amygdala IP Replicate 1 Amygdala IP
- GSM8697327 Amygdala IP Replicate 2 Amygdala IP
- GSM8697328 Amygdala IP Replicate 3 Amygdala IP
- GSM8697329 Amygdala IP Replicate 4 Amygdala IP
- GSM8697339 Amygdala CRS Input Replicate 1 Amygdala CRS Input
- GSM8697340 Amygdala CRS Input Replicate 2 Amygdala CRS Input
- GSM8697341 Amygdala CRS Input Replicate 3 Amygdala CRS Input
- GSM8697342 Amygdala CRS Input Replicate 4 Amygdala CRS Input
- GSM8697343 Amygdala CRS IP Replicate 1 Amygdala CRS IP
- GSM8697344 Amygdala CRS IP Replicate 2 Amygdala CRS IP
- GSM8697345 Amygdala CRS IP Replicate 3 Amygdala CRS IP
- GSM8697346 Amygdala CRS IP Replicate 4 Amygdala CRS IP
- GSM8697347 Amygdala US Input Replicate 1 Amygdala US Input
- GSM8697348 Amygdala US Input Replicate 2 Amygdala US Input
- GSM8697349 Amygdala US Input Replicate 3 Amygdala US Input
- GSM8697350 Amygdala US Input Replicate 4 Amygdala US Input
- GSM8697351 Amygdala US IP Replicate 3 Amygdala US IP
- GSM8697352 Amygdala US IP Replicate 4 Amygdala US IP
- GSM8697353 Amygdala US IP Replicate 5 Amygdala US IP
- GSM8697354 Amygdala WAS Input Replicate 1 Amygdala WAS Input
- GSM8697355 Amygdala WAS Input Replicate 2 Amygdala WAS Input
- GSM8697356 Amygdala WAS Input Replicate 3 Amygdala WAS Input
- GSM8697357 Amygdala WAS Input Replicate 4 Amygdala WAS Input
- GSM8697358 Amygdala WAS IP Replicate 1 Amygdala WAS IP
- GSM8697359 Amygdala WAS IP Replicate 2 Amygdala WAS IP
- GSM8697360 Amygdala WAS IP Replicate 3 Amygdala WAS IP
- GSM8697361 Amygdala WAS IP Replicate 4 Amygdala WAS IP
- GSM8697362 Amygdala CRS hM4Di Input Replicate 1 Amygdala CRS hM4Di Input
- GSM8697363 Amygdala CRS hM4Di Input Replicate 2 Amygdala CRS hM4Di Input
- GSM8697364 Amygdala CRS hM4Di Input Replicate 3 Amygdala CRS hM4Di Input
- GSM8697365 Amygdala CRS hM4Di Input Replicate 4 Amygdala CRS hM4Di Input
- GSM8697366 Amygdala CRS hM4Di IP Replicate 1 Amygdala CRS hM4Di IP
- GSM8697367 Amygdala CRS hM4Di IP Replicate 2 Amygdala CRS hM4Di IP
- GSM8697368 Amygdala CRS hM4Di IP Replicate 3 Amygdala CRS hM4Di IP
- GSM8697369 Amygdala CRS hM4Di IP Replicate 4 Amygdala CRS hM4Di IP
- GSM8697370 Amygdala US hM4Di Input Replicate 1 Amygdala US hM4Di Input
+ 58 more — browse all 98 samples with per-sample file links →
- GSE285147 Astrocyte molecular changes during basolateral amygdala-related emotional behaviors [set2] 23 samples shares amygdala-related, basolateral, astrocyte, emotional, behaviors, changes
- GSE285145 Astrocyte molecular changes during basolateral amygdala-related emotional behaviors [set1] 8 samples shares amygdala-related, basolateral, astrocyte, emotional, behaviors, changes
- GSE285148 Astrocyte molecular changes during basolateral amygdala-related emotional behaviors [set3] 16 samples shares amygdala-related, basolateral, astrocyte, emotional, behaviors, changes
- GSE326646 Astrocyte molecular changes during basolateral amygdala-related emotional behaviors [set8] 12 samples shares amygdala-related, basolateral, astrocyte, emotional, behaviors, changes
- GSE272272 Changes in the astrocyte translatome induced by developmental ethanol mediate dysregulation of neuronal development: role of the extracellular matrix and relevance to Fetal Alcohol Spectrum Disorders 48 samples shares astrocyte, changes
- GSE304378 Mitochondrial complex III-derived ROS amplify immunometabolic changes in astrocytes and promote dementia pathology 27 samples shares astrocyte, changes
- GSE312761 Phenotypic changes in cortical astrocytes translatome across the estrous cycle 19 samples shares astrocyte, changes
- GSE282783 Delayed crosstalk between astrocytes and neurons leads to depressive-like behaviors 12 samples shares astrocyte, behaviors
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.