Exploratory Study on the Mechanism of Left Ventricular Function Recovery After Left Ventricular Assist Device Implantation in Pediatric Dilated Cardiomyopathy
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 12 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Role of NPPB for recovery post ventricular assist device in paediatric dilated cardiomyopathy: Single-cell multiomicsESC heart failure · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE285315_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1202226 and SRA study SRP553520. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8700653 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #1 Gene Expression
- GSM8700654 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #2 Gene Expression
- GSM8700655 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #3 Gene Expression
- GSM8700656 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #1 Gene Expression
- GSM8700657 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #2 Gene Expression
- GSM8700658 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #3 Gene Expression
- GSM8700659 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #1 Open Chromatin
- GSM8700660 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #2 Open Chromatin
- GSM8700661 Pediatric dilated cardiomyopathy without left ventricular functional recovery, #3 Open Chromatin
- GSM8700662 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #1 Open Chromatin
- GSM8700663 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #2 Open Chromatin
- GSM8700664 Pediatric dilated cardiomyopathy with left ventricular functional recovery, #3 Open Chromatin
- GSE270258 Abnormal circadian rhythms exacerbate dilated cardiomyopathy by reducing the ventricular mechanical strength 16 samples shares cardiomyopathy, ventricular, dilated
- GSE246299 Cardiac Fibrosis in Dilated Cardiomyopathy: Transcriptomics Insights, Histological Correlations, and Organoid Model Verifications 67 samples shares cardiomyopathy, dilated
- GSE245825 Cardiac Fibrosis in Dilated Cardiomyopathy: Transcriptomics Insights, Histological Correlations, and Organoid Model Verifications [RNA-seq I] 58 samples shares cardiomyopathy, dilated
- GSE302553 Pathogenetic mechanisms of muscle-specific ribosomes in dilated cardiomyopathy (AC16 RNA-seq) 42 samples shares cardiomyopathy, dilated
- GSE278521 Cytotoxic T-cells drive out come in Inflammatory Dilated Cardiomyopathy 37 samples shares cardiomyopathy, dilated
- GSE263297 Diabetic ischaemic cardiomyopathy: Characterising the left ventricular myocardial molecular profile in advanced human heart failure 21 samples shares cardiomyopathy, ventricular
- GSE295194 Self and parasite-derived peptides selected upon DERAA-bearing HLA-DRB1 alleles activate CD4+ T cells from Chagas cardiomyopathy patients and are associated with ventricular dysfunction 16 samples shares cardiomyopathy, ventricular
- GSE329393 RBM20-variants induce distinct calcium handling and metabolic phenotypes in patient-specific stem cell models of dilated and non-compaction cardiomyopathy 16 samples shares cardiomyopathy, dilated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.