IRF4-regulated transcriptional heterogeneity of lung resident CD11b+ cDC2 subsets during influenza virus infection
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE285970_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1207077 and SRA study SRP555584. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8714201 WT P1 #7579 biol rep 1
- GSM8714202 WT P1 #7580 biol rep 2
- GSM8714203 WT P1 #7588 biol rep 3
- GSM8714204 WT PI #7264 biol rep 4
- GSM8714205 WT CD103 #7579 biol rep 1
- GSM8714206 WT CD103 #7580 biol rep 2
- GSM8714207 WT CD103 #7588 biol rep 3
- GSM8714208 WT CD103 #7618 biol rep 4
- GSM8714209 KO CD103 #7576 biol rep 1
- GSM8714210 KO CD103 #7587 biol rep 2
- GSM8714211 KO CD103 #7617 biol rep 3
- GSM8714212 KO CD103 #7620 biol rep 4
- GSM8714213 WT P2 #7579 biol rep 1
- GSM8714214 WT P2 #7580 biol rep 2
- GSM8714215 WT P2 #7624 biol rep 3
- GSM8714216 WT P2 #7618 biol rep 4
- GSM8714217 KO P2 #7576 biol rep 1
- GSM8714218 KO P2 #7589 biol rep 2
- GSM8714219 KO P2 #7617 biol rep 3
- GSM8714220 KO P2 #7620 biol rep 4
- GSE337601 XCR1+ and CD11b+ migratory dendritic cells cooperate for the crosspriming of intratumoral CD8+ T cells with a tissue-resident memory phenotype [RNA-Seq] 36 samples shares cd11b, resident
- GSE276029 Transcriptional profiling of cDC2 subsets in IFNAR∆CD11c mice treated with allergens 24 samples shares cdc2, subsets
- GSE293467 Effect of CD154:CD11b blockade on antigen-specific CD8 T cell response to murine Epstein-Barr virus infection 10 samples shares cd11b, virus
- GSE337798 XCR1+ and CD11b+ migratory dendritic cells cooperate for the crosspriming of intratumoral CD8+ T cells with a tissue-resident memory phenotype 10 samples shares cd11b, resident
- GSE283401 Gene expression profile of Fcrls+/CD11b+/Ly6C- microglia from young and old mice after abdominal surgery 96 samples shares cd11b
- GSE244652 Transcriptional profiling of myeloid cells (CD11b) and astrocytes (ACSA2) from the striatum and the midbrain of control and parkinsonian animals in the MPTP mouse model 48 samples shares cd11b
- GSE267767 Myeloid lineage (CD45+ CD11b+ cells) analysis sorted from stromal vascular fraction of visceral and subcutaneous adiposetissue in mice in different diet conditions or after rosiglitazone treatment 16 samples shares cd11b
- GSE289590 Indigenous gut microbes modulate neural cell state and neurodegenerative disease susceptibility [5xFAD_CD11b+_Bulk_RNA-seq] 12 samples shares cd11b
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.