Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [EU]
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 12 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE286059_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1207562 and SRA study SRP557884. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 12 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8717161 Nascent RNA Alkbh5 del-cIDR 10min rep1 Nascent RNA Alkbh5 del-…
- GSM8717162 Nascent RNA Alkbh5 del-cIDR 10min rep2 Nascent RNA Alkbh5 del-…
- GSM8717163 Nascent RNA Alkbh5 del-cIDR 20min rep1 Nascent RNA Alkbh5 del-…
- GSM8717164 Nascent RNA Alkbh5 del-cIDR 20min rep2 Nascent RNA Alkbh5 del-…
- GSM8717165 Nascent RNA Alkbh5 del-cIDR 40min rep1 Nascent RNA Alkbh5 del-…
- GSM8717166 Nascent RNA Alkbh5 del-cIDR 40min rep2 Nascent RNA Alkbh5 del-…
- GSM8717167 Nascent RNA Alkbh5 del-cIDR 60min rep1 Nascent RNA Alkbh5 del-…
- GSM8717168 Nascent RNA Alkbh5 del-cIDR 60min rep2 Nascent RNA Alkbh5 del-…
- GSM8717169 Nascent RNA Alkbh5 KO 10min rep1 Nascent RNA Alkbh5 KO 1…
- GSM8717170 Nascent RNA Alkbh5 KO 10min rep2 Nascent RNA Alkbh5 KO 1…
- GSM8717171 Nascent RNA Alkbh5 KO 20min rep1 Nascent RNA Alkbh5 KO 2…
- GSM8717172 Nascent RNA Alkbh5 KO 20min rep2 Nascent RNA Alkbh5 KO 2…
- GSM8717173 Nascent RNA Alkbh5 KO 40min rep1 Nascent RNA Alkbh5 KO 4…
- GSM8717174 Nascent RNA Alkbh5 KO 40min rep2 Nascent RNA Alkbh5 KO 4…
- GSM8717175 Nascent RNA Alkbh5 KO 60min rep1 Nascent RNA Alkbh5 KO 6…
- GSM8717176 Nascent RNA Alkbh5 KO 60min rep2 Nascent RNA Alkbh5 KO 6…
- GSM8717177 Nascent RNA WT 10min rep1 Nascent RNA WT 10min
- GSM8717178 Nascent RNA WT 10min rep2 Nascent RNA WT 10min
- GSM8717179 Nascent RNA WT 20min rep1 Nascent RNA WT 20min
- GSM8717180 Nascent RNA WT 20min rep2 Nascent RNA WT 20min
- GSM8717181 Nascent RNA WT 40min rep1 Nascent RNA WT 40min
- GSM8717182 Nascent RNA WT 40min rep2 Nascent RNA WT 40min
- GSM8717183 Nascent RNA WT 60min rep1 Nascent RNA WT 60min
- GSM8717184 Nascent RNA WT 60min rep2 Nascent RNA WT 60min
- GSE286064 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [Histone_LCD_RNA] 16 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone, mammals
- GSE287065 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [Histone LCD] 48 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone, mammals
- GSE202300 KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity 17 samples shares demethylases, histone
- GSE242901 An Intrinsically Disordered Region Controlling Condensation of a Circadian Clock Component and Rhythmic Transcription in the Liver [ChIP-seq] 45 samples shares intrinsically, disordered
- GSE295425 Targeting branched-chain amino acids alleviates pulmonary fibrosis [CUT&Tag, histone_modification] 20 samples shares targeting, histone
- GSE341984 KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity 12 samples shares demethylases, histone
- GSE284500 Transcriptional profiling of hippocampus from a zQ175 KI mouse model of Huntington's disease treated with either HTT-10150 siRNA targeting full-length HTT or combination of HTT-634 and HTT-486 siRNAs targeting HTT1a 192 samples shares targeting
- GSE284497 Transcriptional profiling of striatum from a zQ175 KI mouse model of Huntington's disease treated with HTT-10150 siRNA targeting full-length Htt 143 samples shares targeting
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.