Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [Histone_ALKBH]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 12 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE286063_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1207566 and SRA study SRP555852. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 6 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8717211 H3K9me3 Alkbh5 del-cIDR rep1 H3K9me3 Alkbh5 del-cIDR
- GSM8717212 H3K9me3 Alkbh5 del-cIDR rep2 H3K9me3 Alkbh5 del-cIDR
- GSM8717215 H3K9me3 WT rep1 H3K9me3 WT
- GSM8717216 H3K9me3 WT rep2 H3K9me3 WT
- GSM8717217 H3K27ac Alkbh5 del-cIDR rep1 H3K27ac Alkbh5 del-cIDR
- GSM8717218 H3K27ac Alkbh5 del-cIDR rep2 H3K27ac Alkbh5 del-cIDR
- GSM8717221 H3K27ac WT rep1 H3K27ac WT
- GSM8717222 H3K27ac WT rep2 H3K27ac WT
- GSM8717223 H3K4me3 Alkbh5 del-cIDR rep1 H3K4me3 Alkbh5 del-cIDR
- GSM8717224 H3K4me3 Alkbh5 del-cIDR rep2 H3K4me3 Alkbh5 del-cIDR
- GSM8717227 H3K4me3 WT rep1 H3K4me3 WT
- GSM8717228 H3K4me3 WT rep2 H3K4me3 WT
- GSE287065 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [Histone LCD] 48 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone
- GSE286066 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [YY1] 8 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone
- GSE286060 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [ATAC-seq] 6 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone
- GSE286059 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [EU] 24 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone
- GSE286064 Intrinsically disordered regions restrain genomic targeting of RNA and histone demethylases in mammals and plants [Histone_LCD_RNA] 16 samples shares intrinsically, demethylases, disordered, targeting, restrain, regions, histone
- GSE300149 Targeting intrinsically disordered nuclear protein 1 (NUPR1) with single-domain antibodies alleviates triple-negative breast cancer (TNBC) progression in vivo 8 samples shares intrinsically, disordered, targeting
- GSE275475 Intrinsically Disordered Regions in Chromodomain Helicase DNA-binding (CHD) Proteins Shape Distinct Protein Interaction Networks 6 samples shares intrinsically, disordered, regions
- GSE242901 An Intrinsically Disordered Region Controlling Condensation of a Circadian Clock Component and Rhythmic Transcription in the Liver [ChIP-seq] 45 samples shares intrinsically, disordered
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.