Five Substances Powder with Poria ameliorates lipid metabolic disorders in obese mice by modulating gastric inhibitory polypeptide release via intestinal microbiota regulation
RNA-seq (gene expression) · mouse · 11 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 11 samples: 4 × intestine,HFD vs 4 × intestine,Five Substances Powder with Poria vs 3 × intestine,NDGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE286337_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1208941 and SRA study SRP556460. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 11 samples.
How we read this: 3 replicated groups read from 11 sample titles; they account for 11 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8723756 intestine,HFD1 intestine,HFD
- GSM8723757 intestine,HFD2 intestine,HFD
- GSM8723758 intestine,HFD3 intestine,HFD
- GSM8723759 intestine,HFD4 intestine,HFD
- GSM8723760 intestine,Five Substances Powder with Poria1 intestine,Five Substanc…
- GSM8723761 intestine,Five Substances Powder with Poria2 intestine,Five Substanc…
- GSM8723762 intestine,Five Substances Powder with Poria3 intestine,Five Substanc…
- GSM8723763 intestine,Five Substances Powder with Poria4 intestine,Five Substanc…
- GSM8723764 intestine,ND1 intestine,ND
- GSM8723765 intestine,ND2 intestine,ND
- GSM8723766 intestine,ND3 intestine,ND
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.