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Alterations in Bile Acid Physiology in Wilson Disease [ChIP-seq]

GSE286956 Mus musculus Genome binding/occupancy profiling by high throughput sequencing 8 samples Submitted 2025/06/04 Platform GPL24247
Summary
Background & Aims: Wilson disease (WD) is an autosomal recessive disorder that results in excessive hepatic copper causing hepatic steatosis, inflammation, fibrosis, cirrhosis, and liver failure. Previous studies have revealed dysregulation of many FXR metabolic target genes in animal models of WD, including Bsep, the major determinant of bile flow. Approach & Results: We tested the hypothesis that the FXR-cistrome is decreased in Atp7b-/- mice in accord with dysregulated bile acid homeostasis. RNA-Seq and ChIP-Seq analyses of Atp7b-/- and wild-type (WT) mouse livers confirmed that significantly altered transcripts and FXR-binding events overlapped. Decreased FXR occupancy in Atp7b-/- versus WT mice was observed genes of metabolic pathways and bile acid homeostasis, while enrichment of FXR binding was observed pathways associated with cellular damage, such as the focal adhesion pathway. Consistent with decreased FXR function, serum and liver bile acid concentrations were higher in Atp7b-/- mice than in WT mice. Comparison of bile acid profiles in the serum of WD patients with “liver,” “neurological,” or “mixed” disease vs. healthy controls also revealed increases in specific bile acids in WD-liver vs. healthy controls. Conclusions: Atp7b-/- mice and WD patients exhibited changes in serum bile acid speciation, likely due to FXR dysfunction. These findings provide new insights into possible aberrant bile acid homeostasis in patients with WD.
Published in
Changes in the FXR-cistrome and alterations in bile acid physiology in Wilson disease
Wooton-Kee CR, Yalamanchili HK, Mohamed I et al. · Hepatology communications 2025 · PMID 40408300 · doi:10.1097/HC9.0000000000000707
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Also filed as BioProject PRJNA1210601 and SRA study SRP557267. Searching any of these in the dataset finder brings you back here.

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