Sex-specific extracellular matrix remodeling in skeletal muscle after extended immobilization
RNA-seq (gene expression) · mouse · 112 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 112 samples: 112 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE287100_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1211123 and SRA study SRP557606. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 112 sample titles: 112 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8738629 1F LG
- GSM8738630 1F RG
- GSM8738631 2F LG
- GSM8738632 2F RG
- GSM8738633 3F LG
- GSM8738634 3f RG
- GSM8738635 4F LG
- GSM8738636 4F RG
- GSM8738637 5F LG
- GSM8738638 5F RG
- GSM8738639 6F LG
- GSM8738640 6f RG
- GSM8738641 7F LG
- GSM8738642 7F RG
- GSM8738643 8F LG
- GSM8738644 8F RG
- GSM8738645 9F LG
- GSM8738646 9F RG
- GSM8738647 10F LG
- GSM8738648 10F RG
- GSM8738649 11M LG
- GSM8738650 11M RG
- GSM8738651 12M LG
- GSM8738652 12M RG
- GSM8738653 13M LG
- GSM8738654 13M RG
- GSM8738655 14M LG
- GSM8738656 14M RG
- GSM8738657 15M LG
- GSM8738658 15M RG
- GSM8738659 16M LG
- GSM8738660 16M RG
- GSM8738661 17M LG
- GSM8738662 17M RG
- GSM8738663 18M LG
- GSM8738664 18M RG
- GSM8738665 19M LG
- GSM8738666 19M RG
- GSM8738667 20M LG
- GSM8738668 20M RG
+ 72 more — browse all 112 samples with per-sample file links →
- GSE325919 Mitochondrial remodeling in skeletal muscle underlies exercise-induced reversal of age-associated functional decline in mice and humans 30 samples shares remodeling, skeletal, muscle
- GSE293383 Viscoelastic Extracellular Matrix Enhances Epigenetic Remodeling and Cellular Plasticity [RNA-seq] 12 samples shares extracellular, remodeling, matrix
- GSE295428 Spaceflight induces systemic effects on extracellular matrix and immune system in different age-stages 229 samples shares extracellular, matrix
- GSE289885 Hybrid hydrogel–extracellular matrix scaffolds identify biochemical and mechanical signatures of cardiac ageing 29 samples shares extracellular, matrix
- GSE309618 Mesangial cell-derived extracellular matrix protein 1 is essential for maintaining mesangial matrix homeostasis and glomerular architecture 18 samples shares extracellular, matrix
- GSE271194 Effect of genetic modification of extracellular matrix-related genes on B16F1 melanoma progression 15 samples shares extracellular, matrix
- GSE269445 In vivo CRISPR screens in Head and Neck Cancer reveal that Uchl5 modulates extracellular matrix deposition to promote immune evasion [in vivo] 11 samples shares extracellular, matrix
- GSE271805 Lymphoma B cells remodel bone marrow stromal cell network into extracellular matrix-producing cancer-associated fibroblasts (scRNAseq) 4 samples shares extracellular, matrix
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.