scRNA-seq of tumor-infiltrating CD45+ cells from B16-F10 tumor-bearing mice treated with vehicle and DOPAC.
Single-cell RNA-seq · mouse · 2 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE287577_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1213774 and SRA study SRP558739. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE205198 Single cell RNA sequencing CD45+ tumor-infiltrating lymphocytes (TILs) samples from glioma mouse model treated with PBS or ibudilast. 2 samples shares cd45, tumor-infiltrating, treated
- GSE313761 Single-cell screens identify ADAM12 as a fibroblast checkpoint impeding anti-tumor immunity - scRNA-seq of Adam12CKO Mouse Model CD45- cells 11 samples shares cd45, scrna-seq
- GSE292667 Gene expression profile at single cell level of sorted CD45+ cells from the GL261 tumor bearing hemisphere, treated with PBS / CSI / CSI+aPD1 11 samples shares cd45, treated
- GSE279330 Tumor CD45+ cells and spleen LY6G+ PMNs isolated from Hdc-GFP mice with subcutaneous ACKP syngeneic GC line-established tumors and treated with TFF2-MSA and/or anti-PD-1 therapies. 8 samples shares cd45, treated
- GSE233489 scRNA-sequencing of colon and dura CD45+ cells following Salmonella infection 8 samples shares cd45, scrna-seq
- GSE249142 Transcriptomics of PTEN knockout B16-F10 cells in C57BL/6J mice model treated with PTEN 8 samples shares b16-f10, treated
- GSE250508 scRNA-seq analysis of skin CD45+ cells mice where Tsc2 is deleted in CD11c-expressing cells 6 samples shares cd45, scrna-seq
- GSE231657 Gene expression profiles at single cell level of CD45+ tumor-infiltrating immune cells in intra- and extra-cranial tumors 6 samples shares cd45, tumor-infiltrating
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.