Chemokine (C-C motif) Ligand 2 Expressing Adventitial Fibroblast Expansion During Loeys-Dietz Syndrome Aortic Aneurysm Formation [8wk mouse]
RNA-seq (gene expression) · mouse · 2 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Chemokine (C-C Motif) Ligand 2 Expressing Adventitial Fibroblast Expansion During Loeys-Dietz Syndrome Aortic Aneurysm FormationArteriosclerosis, thrombosis, and vascular biology · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288084_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1216025 and SRA study SRP560046. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE266241 Reduction of inhibitory signaling and selective induction of C-C motif chemokine ligands after spinal cord ischemia 29 samples shares c-c, chemokine
- GSE300219 Macrophage-derived Chemokine (C-C motif) ligand 24 (CCL24) promotes cardiac fibrosis 14 samples shares c-c, chemokine
- GSE286541 Myelin antigen capture in the CNS by B cells expressing EBV latent membrane protein 1 leads to demyelinating lesion formation [scRNA-Seq] 14 samples shares expressing, formation
- GSE253547 RNA-sequencing comparing the transcriptome of adventitial LepR+ fibroblasts versus their interstitial LepR- counterparts. [mouse RNA-Seq] 12 samples shares adventitial, fibroblast
- GSE296074 Primary adventitial fibroblast response to TGFb is dependent on vascular site and implicates functional developmental epigenomic memory 12 samples shares adventitial, fibroblast
- GSE287341 Dynamic Reprogramming of Stromal Pdgfra-expressing cells during WNT-Mediated Transformation of the Intestinal Epithelium [Figure 5] 12 samples shares expressing, formation
- GSE287336 Dynamic Reprogramming of Stromal Pdgfra-expressing cells during WNT-Mediated Transformation of the Intestinal Epithelium [D8] 9 samples shares expressing, formation
- GSE308661 Investigating the role of Cmtr1 in splicing: control Cmtr1 fl/fl fibroblasts expressing empty vector 4 samples shares expressing, fibroblast
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.