Reorganization of H3K9me2-modified chromatin regions during mouse embryonic development
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 33 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 33 samples: 9 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Reorganization of H3K9me2-modified chromatin regions during mouse embryonic developmentDevelopmental biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288731_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1219161 and SRA study SRP561516. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 33 samples.
How we read this: 9 replicated groups read from 33 sample titles; they account for 33 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8774032 forebrain H3K9me2 b1 forebrain H3K9me2 b
- GSM8774033 forebrain H3K9me2 b2 forebrain H3K9me2 b
- GSM8774034 forebrain H3K9me2 b3 forebrain H3K9me2 b
- GSM8774035 forebrain IgG b1 forebrain IgG b
- GSM8774036 forebrain IgG b2 forebrain IgG b
- GSM8774037 forebrain IgG b3 forebrain IgG b
- GSM8774038 forebrain IgG b4 forebrain IgG b
- GSM8774039 forebrain IgG b5 forebrain IgG b
- GSM8774040 forebrain IgG b6 forebrain IgG b
- GSM8774041 forebrain LaminB b1 forebrain LaminB b
- GSM8774042 forebrain LaminB b2 forebrain LaminB b
- GSM8774043 forebrain LaminB b3 forebrain LaminB b
- GSM8774044 heart H3K9me2 b1 heart H3K9me2 b
- GSM8774045 heart H3K9me2 b2 heart H3K9me2 b
- GSM8774046 heart H3K9me2 b3 heart H3K9me2 b
- GSM8774047 heart IgG b1 heart IgG b
- GSM8774048 heart IgG b2 heart IgG b
- GSM8774049 heart IgG b3 heart IgG b
- GSM8774050 heart IgG b4 heart IgG b
- GSM8774051 heart IgG b5 heart IgG b
- GSM8774052 heart IgG b6 heart IgG b
- GSM8774053 heart LaminB b1 heart LaminB b
- GSM8774054 heart LaminB b2 heart LaminB b
- GSM8774055 heart LaminB b3 heart LaminB b
- GSM8774056 mES H3K9me2 b1 mES H3K9me2 b
- GSM8774057 mES H3K9me2 b2 mES H3K9me2 b
- GSM8774058 mES H3K9me2 b3 mES H3K9me2 b
- GSM8774059 mES IgG b1 mES IgG b
- GSM8774060 mES IgG b2 mES IgG b
- GSM8774061 mES IgG b3 mES IgG b
- GSM8774062 mES LaminB b1 mES LaminB b
- GSM8774063 mES LaminB b2 mES LaminB b
- GSM8774064 mES LaminB b3 mES LaminB b
- GSE292285 Depletion of lamin-associated polypeptide 2 alpha leads to chromatin reorganization and redistribution of A-type lamins to open genomic regions [ChIP-seq] 22 samples shares reorganization, chromatin, regions
- GSE304211 H4K16ac contributes to chromatin compartment reorganization during mitotic and meiotic transitions [CUTnTAG] 128 samples shares reorganization, chromatin
- GSE298418 MeCP2 stabilizes the glucocorticoid system in active chromatin regions [CUT&Tag] 63 samples shares chromatin, regions
- GSE204933 Age-associated chromatin reorganization drives overexpression of a novel Btaf1 variant regulating HSC self-renewal and MkP differentiation in male mice 82 samples shares reorganization, chromatin
- GSE241378 Alternative splicing of a chromatin modifier alters the transcriptional regulatory programs of embryonic stem cell maintenance and neuronal differentiation. 36 samples shares chromatin, embryonic
- GSE315771 HDI-STARR-seq library profiling of differential accessible chromatin regions (DARs) in livers of male, female and male treated with continuous growth hormone (cGH) mice. 12 samples shares chromatin, regions
- GSE295340 Polycomb Chromatin Topology Enables Long-Range Enhancer Recruitment during Craniofacial Development [ChIP-seq] 42 samples shares chromatin
- GSE216371 A single-cell atlas of chromatin accessibility in mouse organogenesis 68 samples shares chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.