Fibrogenic gene signature as early prediction for the efficacy of pharmacological interventions for MASH-associated fibrosis, part1
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 8 × C vs 8 × H vs 8 × O10d vs 8 × O20gGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Fibrogenic Gene Signature as Early Prediction for the Efficacy of Pharmacological Interventions for MASH-Associated FibrosisFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE290235_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1226630 and SRA study SRP565547. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 4 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8808955 C_01 C
- GSM8808956 C_02 C
- GSM8808957 C_03 C
- GSM8808958 C_04 C
- GSM8808959 C_05 C
- GSM8808960 C_06 C
- GSM8808961 C_07 C
- GSM8808962 C_08 C
- GSM8808963 H_09 H
- GSM8808964 H_10 H
- GSM8808965 H_11 H
- GSM8808966 H_12 H
- GSM8808967 H_13 H
- GSM8808968 H_14 H
- GSM8808969 H_15 H
- GSM8808970 H_16 H
- GSM8808971 O10d_17 O10d
- GSM8808972 O10d_18 O10d
- GSM8808973 O10d_19 O10d
- GSM8808974 O10d_20 O10d
- GSM8808975 O10d_21 O10d
- GSM8808976 O10d_22 O10d
- GSM8808977 O10d_23 O10d
- GSM8808978 O10d_24 O10d
- GSM8808979 O20g_25 O20g
- GSM8808980 O20g_26 O20g
- GSM8808981 O20g_27 O20g
- GSM8808982 O20g_28 O20g
- GSM8808983 O20g_29 O20g
- GSM8808984 O20g_30 O20g
- GSM8808985 O20g_31 O20g
- GSM8808986 O20g_32 O20g
- GSE290237 Fibrogenic gene signature as early prediction for the efficacy of pharmacological interventions for MASH-associated fibrosis, part2 32 samples shares pharmacological, mash-associated, interventions, fibrogenic, prediction, signature, efficacy
- GSE276967 Sex-specific molecular signature of mouse podocytes in homeostasis and in response to pharmacological challenge with rapamycin 20 samples shares pharmacological, signature
- GSE294832 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part10] 1000 samples shares part1
- GSE294911 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part14] 1000 samples shares part1
- GSE294849 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part13] 1000 samples shares part1
- GSE294958 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part17] 1000 samples shares part1
- GSE294402 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part1] 1000 samples shares part1
- GSE294926 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part15] 1000 samples shares part1
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.